Scaffold Ga0214919_10003040

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10003040
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25804
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (76.74%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000166	Metagenome / Metatranscriptome	1810	Y
F001097	Metagenome / Metatranscriptome	780	Y
F001713	Metagenome	648	Y
F001799	Metagenome / Metatranscriptome	632	Y
F002099	Metagenome / Metatranscriptome	593	Y
F002487	Metagenome / Metatranscriptome	554	Y
F007203	Metagenome / Metatranscriptome	356	Y
F059761	Metagenome	133	Y
F067527	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000304019	F059761	AGG	MTELSLFEKAMGWRKRQMVTSQVDRNEIIGKIRSDTLEEVAREFDKMKPFGDTAQSFATFVRDMKSCPPCNNNCNQGKDCPARCK
Ga0214919_1000304020	F001713	AGGA	MKYEFDTTTGEGSVIVTVVMEYEQDEEGTYNENIDEVWFEGRNVMGIFTDTQFKELEIEGTMRLSSHLLAEADHAKIIAYEHE
Ga0214919_1000304023	F001097	AGGAG	MNFEWPINESSRIKPLQGLRSERVDTEIQQKEIDDWLKQSVALVAGSVRGLGTNQRKVRYFAFEGQNDEVTK
Ga0214919_1000304027	F002487	N/A	MTRQDAIKDLSHGDYCCYCTEPKTSGLCCGENHFVPFEDLYDDDKEAMIEEYLSKGN
Ga0214919_1000304033	F000166	AGG	MSNIPTPEHIELFAQSVRKWQQILSLGDWRIEKGIKPAKAAMASVEFNQTARLATYRLGDFGAEKITPDSLDRTALHELLHIFLYDLMCVATDPKSSDEEIEMQEHRVINLLENLLSKDSNGFT
Ga0214919_1000304037	F067527	GAG	MIIPSKWYPMVQPRYDFQTVVFDKAAEKVDDDYRLAMKAHKIELVIAELEVELYNKKARVNQLELAMFKTRRLDLYA
Ga0214919_1000304038	F002099	N/A	LGNAVRWLLALVLTLALHSTGKDLCSVREFWSIAYTIHNPSERHQQLSMWLTNNARLCRSQDFVVIWNNLPVWAGTADSAEIRSKVIHGYKEAIEREKK
Ga0214919_100030405	F001799	GGA	MDKHLLAQWAKNLLNDDFFKEVLNNLKNQQISVIINTSAEECDRRETAYQHIKTLELITGHLEGLASETVIRDKKWKIL
Ga0214919_100030408	F007203	GGA	MYVQMQGINLAPKVKELEKRLEMLENMVKELQSSSRPKLGRPPKDAHGNERLEVDTAS