Scaffold Ga0214919_10002598

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10002598
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28173
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (16.39%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050364	Metagenome / Metatranscriptome	145	Y
F071252	Metagenome / Metatranscriptome	122	Y
F097358	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000259834	F097358	N/A	MLNKKLFLFCFMFLSLSSCTVYTEKQSEALSKVVYASKDSMEAARIDLADKYITETTRLIRPPKNRIKIESIYQKTVNQHINTIGSSSKHDAIPINKQRMVIIPEKYRADTVVVVSTDEYQKLLNDKETFAQIQRDNEGLSEAKQTVDEELVRQLNNRDKMVNDLNMMQKKLVEKDLAILQRNIIILALVAMMGGATYLRIKGIL
Ga0214919_1000259853	F071252	N/A	MSNKYEKFTKKALDKMFTYIGFEGFNEEFTKQHEDWYQQKTWTMEQSADFKKWFITETKKDLKFNKNMAEKEHAWFDLKWGWKVSDDPYFSKQKELVHD
Ga0214919_1000259857	F050364	AGG	MRADYKNTKVGDKIVFKRSGEWHYFLSRVENAKKLEAGKTYTVKEISVASSSTGVKLEETEELEYELCWFDKNETSES