Scaffold Ga0214919_10002577

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10002577
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28372
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (80.77%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001106	Metagenome / Metatranscriptome	776	Y
F003408	Metagenome / Metatranscriptome	488	Y
F009961	Metagenome / Metatranscriptome	310	Y
F012456	Metagenome / Metatranscriptome	280	Y
F014144	Metagenome / Metatranscriptome	265	Y
F070122	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_100025772	F001106	AGGAG	MSFDTLKVAELKAIATDFAVDTENLKNKKDIIAALAEEGVTWSVYQSTIEAIEKDTEEIEILPKFDPKAQPEDTVLVRMTRDNMRYDIHGYTFTKDHPFVAMSEEDAQKIFDSEEGFRLATPKEVQDFYN
Ga0214919_1000257720	F014144	AGGCGG	MEKSRVVTCDICKRDIEVRWGIFASDTLNRHKKAEHK
Ga0214919_100025774	F070122	N/A	MSLATSLMPMKLDIYLQLDTQDENTGSIKKEWIFTRSVPCSAKGIISNSGSGRSGDKQIFNNKYSNEQMLEIRTPDQITYREKITNVRDMSGNVVWKEINYPNNTPTVFEVISSTPITDPFGNVLAYNSVAKRSENQEIGF
Ga0214919_100025775	F012456	GGAG	LDSSVALIQTASGLERLMAGSAPGVLRDSTVAQVSAFLYYEAAVLSKLTTNAEFKNLFKTTIFNQIEKDFGEYIDSQARVRPRSLHHVYEWNKVGVPTSRLFRLSRFDTDGLSFRINYDFKLSKSSVPSKNKKQKKKYIFTNKALVMETGMPVVIRPRSAERLVFELDGETVFMPKGTSVTVKRPGGAQATNQFALSYGRFFGGQLVNSSIKSSGLQRIFNSKMTKALNIPISIKKVQYSFSPGKIRTQADASLQAAFGGSL
Ga0214919_100025776	F009961	GGAGG	MTVDYKIDAMFELRKFLWKELKDAGIFDPYDYYSDNLGREIIPIIPVQQSPEMDQFLNGKKHIVYDKIGMSFEDIWLIACEKVLFTIYSTDITEVYEIRNLMMDLFRRMDESARDANNSRDTDKLIFHSIHVVETSPIEPSAELQGFISTDVILEVKYSRTTDSKGRFN
Ga0214919_100025779	F003408	AGAAG	MPELIQTFKSMQKSESEKRRFLASIQGVDLNESSNQNEGGSTFEDVKRRALGINASADDVVSLQGSFASEAGFGIGAGLGYSIE