Scaffold Ga0214919_10002407

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10002407
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29464
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (22.41%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050364	Metagenome / Metatranscriptome	145	Y
F060915	Metagenome / Metatranscriptome	132	Y
F064721	Metagenome / Metatranscriptome	128	N
F071252	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000240713	F071252	N/A	MNKFDKFLKKSLDKMFTFVGFDSYNEEFTKQHADWYNQKAWSQSQSDEFKKWFLTEGKKDLKFSKQMMEKEYNWFDLKWGWKISNDSSLLKEKELVHD
Ga0214919_1000240714	F050364	N/A	VHIVCGIVEMTCTNSMRADYKNTKVGDKIVFKQSTKHWFLNREENAKKLEVGKTYTVKEISVASSSTGVKLEETEELEYELCWFDKI
Ga0214919_1000240720	F064721	GGA	MTLEQKIVSHVIVGGLFRISEFIANIIMWLMRLFKTRKPHYLYVYLKYEQDFLYPLAEKICYCLGLKREWQVHQEGLNKLHKLIFGEGAKKD
Ga0214919_1000240724	F060915	GAG	MKTKLNWKKKWLDDKSGYWYSANVPIIGWEYIVDTHYDDLGTDCGFIGGLYFSKFDDDITRVTNKFYKTQEAAMKACEKHLINTAEKFNNWINHGQK