Scaffold Ga0214919_10001949

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10001949
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33128
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (79.63%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000368	Metagenome / Metatranscriptome	1223	Y
F020909	Metagenome	221	Y
F021112	Metagenome	220	Y
F028173	Metagenome / Metatranscriptome	192	Y
F033806	Metagenome	176	N
F045100	Metagenome / Metatranscriptome	153	Y
F077306	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000194917	F033806	AGG	MIFEKQPREPLFSIHNHSDGSIALYLEEQDAVKDLVQDIVGAYELDDLDLLRHSADRSVKSENYFEHLDNARDNLSENAPLLCNMTEQEALILAEDLIRAVKFARISREAGTNYPSLKAV
Ga0214919_1000194922	F020909	GGA	MITKRGKRVRAVAIAVGIFVVWQVASNLWWVGIDAPTAEFLGWCWGSMNECVVL
Ga0214919_1000194933	F000368	GGAG	MEKFKQISLTWFRAAAASAIALYLAGETDLKTLGLAALAGAAGPILKWLDSSAVDFGRGS
Ga0214919_1000194938	F077306	GGAG	MPAFDGVTTPAVAVQFLKSGTWTSVTTTDVVRIDIRRGRTRQSERDQAGISVVTFNNTSGYYDPDNTSVSNPWVVSGTNILRDGLQMRIVATIGGTPYYLYYGFLEETKVNQGEAPSVAMTFVDGIAYIADAQAPALATAGFAETAATRVGRMLTYAGWTGSTSLTGTVGMLATVQNRSCMALIYQAVDAIAGRFYISRSGVATLVPLADKFSRPTQLLFTDNQASNTVPYSQLYTNPGTYYVVNQAVVSRTNTTKQYTSRYNPSVSAYGIAKNVIDAPVATDSNAQNLALYESRKNATPDTYVERIDFNALAVGTYGLLYPDFLATELADQVSVLRTTYDGRTIQWNLVVEGMAHTITQNNWLVSYTTSAINPYSITI
Ga0214919_100019494	F021112	GGTGG	MAIPFLRREAEDFVAPGRSGSGTVSAERSIGVNVNALDYSMANELLGILHSWESEIRSARQLTPPALLKKESSIDQEVQVACDFQIAHLDWTLGQDWAADFYVEIKEQHAKGMAAAKQFVEQPRRIPCPTDDCGKYVVIDAENLMQDVTCFGCKQSWTVLRLVALAMSNPNRKFFLDAEAIALWLGITQRQVHKIIKANNIERRGSLYDLSAVIANR
Ga0214919_1000194940	F028173	GAG	MADEVIVLTGIKETLDALKEFDKDAVKRFNKVINTELKGAERDARNLISEDPPMSGWRKTDPIKGKTRGGAGWPGWNAGEIKSKITKTKAQGKVRGDYTTSAGALLNKSAAGAIFEVAGKKASGTKAMTAQSSSGQFLRTIGNRFGKASRVVWRVVDKDRNKIEANVNRALEQAKADLQKHLNRERA
Ga0214919_1000194944	F045100	AGG	MSYIVTSDNFEAKKKGETITDKELLDLGLNADALVAGEHIKKSAAIKPATVEETK