Scaffold Ga0214919_10001926

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10001926
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33293
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (84.13%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002707	Metagenome	535	Y
F011742	Metagenome	287	N
F020138	Metagenome	225	Y
F032955	Metagenome	178	Y
F034109	Metagenome	175	N
F040522	Metagenome	161	N
F040534	Metagenome / Metatranscriptome	161	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000192624	F040522	N/A	MANGCVAAIRKGCELYKEVKGTVAAAQKTVKEVTAIAEEVGGFFGFFKKKKPKPTATPVAPKAKKAEAEIWDEGRVVADLAANLSQFFKVQQQLADHIREEEEKSKTVYDPNQNIMESALNRELAKTQFEKLAKEIREIMVYQSPPELGNLYTRVNQMRVIIIAEQEEARLAQEKKQREVEWQRRKVISAIQDKAIYGAVCLVFVLYLILFFSLLTMDRKLRWGF
Ga0214919_1000192635	F011742	AGGAG	MQTIEFVPFEWDDADFNPEIDRIEVDYEWHEGDNSVGLISYCEKKVKWMRFNLEIKDITDELSYADLAYLKHEIKRNDDEFIVD
Ga0214919_1000192636	F020138	AGG	MNQQQTTRLNAFWQDVEAHKALNPSLPESALVILKSVALDALLAAQDIEQIGVNDANN
Ga0214919_1000192644	F040534	AGGAG	MNTDKSGEGRILSLSTLGEPMSEEEFEDKMNTYELDQQYAEYIMERRNVGNGEMLIRLMERGELYEDFKEHIMFGSK
Ga0214919_1000192649	F032955	AGGA	MNKDEAHHLLNKRKQGLAVAQYLVDYALVVSGDIGPSCFNGKNSRLEGSGMAQGTGVREMPNIPMAWDFDRFNQHHESPQ
Ga0214919_1000192651	F034109	GAG	MANKINPSRTQTDFKLDLSPEQRAILELIGGGNMTQGLKVAIDQAGHFYNCGLDPEMNLNYVGLVTTLPNQDDD
Ga0214919_1000192652	F002707	GAGG	MTQSQALTQALVLAIIAPDDNKAAQASTLAMQIAQGLTKTQVNRCKAQALKMIGENP