NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10001916

Scaffold Ga0214919_10001916


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10001916 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33377
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (6.38%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029558Metagenome188Y
F039039Metagenome164Y
F067522Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1000191630F039039N/AMMHLFRKEKFDSNLYDLELKVEAQQKQIDELRTLILELSKQINSLQIEIDYLSNNRYGKG
Ga0214919_1000191639F029558N/AMKFIKLGDYTEALIHVITFGFGHRIATLIANLMGFQSCGCCERKQWLNRLTDKDYDGQCGQIKLF
Ga0214919_1000191643F067522N/AMITGSCECERRLINLHSESHKWLLNSANKITHNREESEDLVQELYIYLHEKCNPKLFWGDKSYNLFYASKFLHSRFINKTKKLNRTTLVDEVWSNEEDIPYDEERDLQIQKTHDEVINELKKLSTTRMWPSAKIFELYWMSDDTLDEVARKIKISKSTTFLAVKKIRKYLKEVIENPFDEKDKTI

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