Scaffold Ga0214919_10001901

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10001901
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33542
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (80.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001091	Metagenome / Metatranscriptome	781	Y
F014362	Metagenome	263	Y
F017642	Metagenome / Metatranscriptome	239	N
F052390	Metagenome / Metatranscriptome	142	N
F077280	Metagenome / Metatranscriptome	117	N
F078376	Metagenome / Metatranscriptome	116	Y
F100418	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000190114	F100418	N/A	MLKKDKNFRISKQVKRTMATFIDPVARHAYKNSMIEAQIFGSQIFEKKKKRANETETT
Ga0214919_1000190117	F078376	AGGA	MVKKKVKIELYEQAPYIQGYNSAIAKEEFYNPYDDVENAEADAEDYARGYENALEVE
Ga0214919_1000190120	F001091	N/A	MKENMNIREIAKKLAIDNRLPRADRYDLYLRDFDGMVEVLGWMQDPTADMNDYRGREMLFPKRWVTIGVLSGDMKVNV
Ga0214919_1000190127	F014362	GAG	MGTLWEKLLFWKKPKKMLEEGVDYHFFDFKDTDISGIELLMEKYKGVIYHYQKARVVEEEGFARLQFGYTIVHPGEHDIDDLTKDDDLHTIMGDILTTILATQANEQTRTNDNQEFDL
Ga0214919_1000190136	F052390	GAG	MRNVIFCPVGIPLNYHDAYDKENHWRLTKPTRNYEVIAYNYNDFQPETGTYDTIIRDQGFKWDLAKHFLDTFDYRDFDYIGFWDDDLVTDIQSINRALEIATKKDIKMFQLSTIAGSESTHRILHQVPGYSYSLTNFNEGMGGFFHSSLIPIIMDFWKYHEVKSGWGFDIILAPILKQKAGVIHEVSMYHPGKPSYYDKSAAFAEMDHILREVYPKFMKDRYNEDVGPYSEPQIEYEFTFKV
Ga0214919_1000190146	F077280	AGCAG	MNFKQYLAELNTEMGQTIKVNDSVDISDPQVRDKINERLNHELTDLILSPESGVQKIRKVLMSFGLDMPALYDAEPEGDELVLDVESFVGDEQFYLYLIYYLADDGRYDFYAELTDDEGLNEIMSDEEEDEEE
Ga0214919_100019017	F017642	N/A	MNDRRNFIRGAGIIGAFAVGVASYKQVKEMANEHKDISHLAPPKEATTIQFTGAYGEKPKAPDPTPGQSMFYVNGWNQEVTHRVSMTVGKDNRLWMKIGDEWHRVAIES