Scaffold Ga0214919_10001761

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10001761
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34955
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (14.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032657	Metagenome	179	Y
F034181	Metagenome	175	Y
F037724	Metagenome / Metatranscriptome	167	Y
F051915	Metagenome / Metatranscriptome	143	Y
F083724	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000176114	F083724	N/A	MATFQWVIPQDSMVTAKSVDGLSDVVVTINAYREISDEVTSTQIPVCVGLTPPAEGFIPYDQLTKEIVEGWLNENLDVTTLDIELSFQLENIKNPKVQVLPNPF
Ga0214919_1000176117	F051915	AGG	MKFLNSIYGSYVKVFLSAIITMVIAKGDIYLVTLKECFSAGIISILPIIVNYLNPHDTRYGK
Ga0214919_1000176133	F032657	GAG	MIIIEDFIRSSYPLYTIQEFRIAFKMAVQGKLDCSTDHYEKFSPKFIGQVMVAYTKKANELRKMTKVITDDLPTPKLSDEEIVSFTQKEWLESPRIDFNKVFNADKVFEILIKQKKMAFQPEEMLEIVRAVRLDNQFKFNKMYGQDAKEFNKLIKDDKFVDTQCKKLALKRYFENLPS
Ga0214919_1000176139	F034181	AGGAG	MNAIIYLNYQSKNIETLFHNIKNAGKHIDFISIIDETGISFAINKGLTQLNFNHIDYVTIMGNDILEPDNWLVNRNEFLKDETIGICSIPLDGFNGDSLDLIGNFTITKETINRLGAFNEELDPYGAIDLDYCTRCRAAGLHTKFIPNTKATHIEQNGIDAYGYNKMDLVKKTWDLHNKNVSDYLNGTKAYYIPL
Ga0214919_100017614	F037724	N/A	MNPKEALKQIRAIFEDMPQVVEPVAPVTPEVTKVEMAEYSLADGTKVMISALEIGGMVQMADGTPAPAGEHQLMDGTSIQVDELGAIVEIASPKEDIIEEEPVAPAAPVAPAQDTQAMAEALKAEFAEQKSQLEAKISDLESKVKQGFAQVAELVEALSNTPTAEPTQKSANAFQSYVTTNDSKYERLEKYRNAILNK