Scaffold Ga0214919_10001657

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10001657
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36032
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (81.48%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010601	Metagenome	301	Y
F018508	Metagenome	234	N
F021491	Metagenome / Metatranscriptome	218	Y
F023804	Metagenome	208	Y
F036595	Metagenome	169	Y
F046244	Metagenome	151	N
F052462	Metagenome	142	N
F058809	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000165711	F021491	N/A	MSVEKKIEEMVLKYILAAEGKARIMSPQDIGKLTREAMHKGAMLGYDAGMQMARRSHGKELEVAELTVKELTERVKELEMQMIAQQ
Ga0214919_1000165713	F052462	AGGAG	MTRPIGISVPHRKVEDEPQIAINSKVVGYVVKKRAWVSLTDKQIHECIAYGKGGCEIEQTAKNIELKLKALNYD
Ga0214919_1000165721	F010601	AGG	MLCQWVSGDLELSQELRAGKVPVCIREDYIFYLEFYENLLWFHIDIKRWSPQVKKGCHKDFALIENLVGKPIYALIREDDIKLARFAKSFGWSEKCQISLLDGSKAFIYASA
Ga0214919_1000165725	F036595	AGG	MIEFLKELLLAKVNRPKPTVEEVEVQVWAFVVKSITVMVLGIAFGVLYLIGFEKQDAELAPIDSVFLEILKAIAFMGVGTMGGISGRKASTAIAKAIVGEDDAAK
Ga0214919_1000165728	F058809	AGAAG	VFDPITIGAAFKAMQLAYDGITYCCEALSEGKVAVQKIKKATDDAQTIIKDTKSIFGFFKNLFGGSKPDIKQSDSKTATEAKPVAKKKEVYTTHIPNETEIVQQFIGHLGAFFRHHKELTEYVEIKYEEVFASSDPDPETILELSVYKNELDQSYVKLSGMMRGAGVPHQLGPLWENYNNIYSKVQAEQLKRKEQIRIRRQIEAYKQERFRQEKIELGMGLFLVLIIVSWLYAVWINSFIEAF
Ga0214919_100016574	F046244	GAG	MIDEERGAMREHIVWLTKELEDTRTKLKIRDELLSELLNPDELGHAVTNEVRGRIYTILHLQEK
Ga0214919_1000165752	F018508	GGAG	MGKKSLNKVLGGLKQPEFPMNTFEVFMNSRLVELSVVKRDHEKRWGINRLIELVDSEFRIKVWRQAERVFDASRSRDEVKLDRAVGGMVKAYGALEAWAVENGVSEMPEINVVEHEMQDGSVMVVVGNHHDATLYQQFRPDVQNRHIWTMEELELIMESPVIKETMKIKALMPCAALVRLDKDAKEFPEGGATGLDDMKSDELEASSLPKVFDTSKMGKNTANRALEEI
Ga0214919_100016579	F023804	AGGAG	MLEDLYRFKCEVEGVTLVCFLEHEPEELNHGEAPDFPACMNLVNAYCDKVDIAHLLMQSIVDHICEEALTQFNSESEL