NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10001577

Scaffold Ga0214919_10001577


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10001577 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36958
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (80.36%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001396Metagenome / Metatranscriptome705Y
F012451Metagenome / Metatranscriptome280Y
F035228Metagenome / Metatranscriptome172Y
F080900Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1000157727F035228AGGVTKNQSDYDIPARKYDFQTDLKFGHKGEKLVTEFLDALSDGDFEVKTDRYRNGRMVLEMEHNPRKQQNPDGTALWKPSGLAITKAKWWVYVYTLDGSFVIISVPRIKRYLKINKERFNKKKLHDFARTSSNPSKGYLLQPEDVMDMMINTEYDEVRTNITP
Ga0214919_1000157737F012451AGGAGMAYQTMTAATLRSTVRDITDLDAEDLSDSLLNLYIRDGYYRILDLENRWTFLETSFTFSTVANQRAYTIADFTADPISSVVSITDANGIGKRLEMVGYDTAEETYLGTYDTKGDPLFYAVWQGKIHLFPKPDNVRTLTARGYREPIDWATSGGAVDASPNLHFALVYYACSRIYQGLEDSAMADVYKRSFDEGVTLARNSIVKPTSHAYTVLSAGRTKGRPTYKGWTATLGRNFDWSQY
Ga0214919_1000157747F001396GAGMAEVLVPIIVALIMGPIVVILQKLRKENTDQHAEGRILLKVIGSKVDKIGSKLDNHIGWHEGIKEEE
Ga0214919_1000157754F080900AGGMKKIVSEIHALTWTLAGTGMVLITLSGSTRRFGIQITLVAIVIHLLGSILGDKNE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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