Scaffold Ga0214919_10001561

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10001561
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37230
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (75.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006740	Metagenome	365	Y
F007742	Metagenome	345	Y
F053891	Metagenome	140	Y
F062759	Metagenome	130	N
F086807	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000156131	F086807	GAG	MTHRIVVNVETGVVSQVEYTAEEQAAYDAAVAAQAAEAEAVVVVPPTEPAA
Ga0214919_1000156138	F006740	AGGAG	MPAFEKWSHENLVKFAQESYKKLQDQQDHIEQLQNDLKDAIKAYRELIK
Ga0214919_1000156139	F053891	GGAG	MPRPKTELTKSGRAIGIRLTESEYQQWLKIGATKWLRKLLQEKRDASV
Ga0214919_100015615	F062759	AGGA	MKSTRAEYLNFFSNWLHYQFPRNSDIVHNVLITREVQSIVDSDEEAAYWGNRDCWTMHDIANKQIQARGKEFYGVTV
Ga0214919_1000156157	F007742	N/A	MTYYTHKGQAQALADKLAMQDMQAWSYQVHGSPRGFYVAVFDDDGHFMGIL