Scaffold Ga0214919_10001505

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10001505
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37996
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (78.57%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004761	Metagenome / Metatranscriptome	424	Y
F013753	Metagenome / Metatranscriptome	268	Y
F039606	Metagenome / Metatranscriptome	163	Y
F040004	Metagenome / Metatranscriptome	162	N
F054000	Metagenome	140	Y
F072123	Metagenome / Metatranscriptome	121	N
F091376	Metagenome	107	Y
F104779	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000150513	F104779	AGGA	MKNAQLSHEYYGTPVQGIRPSANVPGSKLASASAPYLGRGNFCSANDDTCEGRKAKGTDLCMGHLRSAGQV
Ga0214919_1000150514	F004761	AGG	MGMSLTDVRLMVRNISDLDTTDLPNAVLDDFVKEAFQRIIVLERRWPTYQQTYTFSTVANQRIYPISAIGDIREVISLIDTSSSGVRLTMIPYDNAEEIWLGTTDVAMRPYFYAIWDGAIHLYAKPNIVYPITLRGYRNPVYTWLTTITETIDCDEWFHILLVYFVLSRVYQRQEDPELSQMYLKSFEEGVAMARRDLMKTPSARPLLLSGGTQYPTMRRWMQTIGKTLRNYS
Ga0214919_1000150518	F054000	AGGA	MAYNPADYEARRRGYTQQYAATGAMNAYANFLSQQRGTRDRTNMMQQYDKAQPQIAAGYARRGLQGPNVKSGIFAAGLQDFAKQRAQGLQQFDQGQMESNRAYDLTEAQRLEAFRNQLADMESEKAQTIADAARQLFANRVGAV
Ga0214919_100015052	F091376	AGGA	MKYAQWTIKRPEGTTPEDLIRSRGGQAWGGFMKDANTVVGYVWSDCDLTGLDKWNFETMTHLEAMAIAQSLNPECFFGDDGTIQAPQVAV
Ga0214919_1000150527	F040004	GAGG	VKESRWDIPATGKYNFKTDLAFGKKGEDQVKRFLQGIVNGSFEVKSDRYRNGRMVVEIAQNPRKHGWKDSGLMVTEAQWWVYVYTLNEAMIVISTDRLKRYIKTLPESRIRLFAEGSNNPAKGYLLLPEEVMPLLYHSAHDGNVEE
Ga0214919_1000150531	F039606	GGAGG	MDKDRAIITQVAAKIAADLVSKEGNTDAKVGEFATLFSSVKEIIFEAIDEMSAQAPAQTQANVYEMVKKTFNATPVESGSPSTSGEALQIIGKQHGDLPDWLIKACKRDGVTKVYDNRDGLAVNAKRPWFKSVEGEKAYWAPKTRA
Ga0214919_1000150553	F013753	N/A	MANNEEMTLTVPQQNYLDWLCTAPSERVPVSKAKYALEHTIDETTLRRWQKKEVFLNEWKKRVDDIQGSPERTQKLLDTLYDKALEGDTKSAQLYLQATNRMLPPTVTLQSTKKTNELTDRELDELIGQIAAHEKSRRGLKVV
Ga0214919_100015056	F072123	GAG	MLNITCTGCSTAFYAPELPRRGAICFKCHIRTVNLGFTYGKEDFHGPTIKQRQDKQLADAKSAGINAEPVTNWI