Scaffold Ga0214919_10001485

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10001485
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38253
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (67.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020339	Metagenome / Metatranscriptome	224	Y
F023092	Metagenome / Metatranscriptome	211	Y
F062691	Metagenome / Metatranscriptome	130	Y
F062695	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000148513	F062691	AGGTGG	MNEIKCVTFKTHQTIMGDLGEDETNYIIKNPVQVIAVPPRSASDPGGVGFAPYLAFVEEFDKGVKLPKSEVLTINTPVTDLLNQYTRMFSRIEIAPAGLKL
Ga0214919_1000148514	F020339	AGGAG	MSSTTKVAKQIAETNPKYPKAYKYDVVLREFDNKVELIGLVDDPTYDIADFRGREMLFPKKWVTLDVLETSMKVAA
Ga0214919_1000148520	F023092	N/A	MIMNKVKNNLVKLVNKYTKEQVYTRDYDDVIREGSNEFVRVFAESNPQRTYLVNRTAFEVVK
Ga0214919_1000148527	F062695	AGG	MAMKMFTNASAAFEGESIAINSDIVASVFELITPDENAKLQMRTVIFGVNGTDWHVKEPYLEVVATLNQKD