Scaffold Ga0214919_10001454

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10001454
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38796
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (77.61%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014841	Metagenome / Metatranscriptome	259	Y
F027488	Metagenome	194	N
F057363	Metagenome / Metatranscriptome	136	Y
F103142	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000145419	F057363	AGGAG	MNKKQKAMLASYGRSFLAAMTTTFMLTGGDIFALDATLLKQILAAGIAAVLPVALRAANPNDPAFGKVADAVTEVVVKKVTAPAKKKAVKKAAK
Ga0214919_1000145425	F027488	GAG	MIKVWSDSPYDGTRLLIHLALADISHDDGRFFASQSNLSKKSRCSVEYIRKVINEMITDGHLRIVSKGNSRGNATTYQLIWKKSSLPNDVEENKVMDDDIELPNSDMDNSPTLIPPLPNSTPYQQSYTTVLSTTKSEDKTAVAVRPISDEIAKVWWEKQRVKPLGKGAWHSLLQITKAAVARGHTPEQIIQALDYIGTVPTMRQMDLILKGAGVRKTKTETNAEKAMELAERLKGESF
Ga0214919_1000145450	F103142	GGAGG	MSLDYKGFEWGNRITSDEDSVDRFLHEGLVPESPSVGDLHGAAEWLATYAAETSEDAQGWANVVAFLILTAESKEKRSAIAKAKREFAKEKGIPVSQVRINRNN
Ga0214919_1000145458	F014841	N/A	MSEEQKKPSIIDNALAEIGRIAFIEPAICTGWVLVAEWMGGNDDHWTITLADDDNPEWRSLGLLHHGIKTWEDADDVGFKNSSDESKD