Scaffold Ga0214919_10001377

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10001377
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40067
• Total Scaffold Genes: 83
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (7.23%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006935	Metagenome	361	Y
F009960	Metagenome	310	Y
F015599	Metagenome / Metatranscriptome	253	Y
F042325	Metagenome	158	Y
F074879	Metagenome	119	Y
F097324	Metagenome	104	N
F103248	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_100013771	F009960	N/A	MLTLKNIHKINGYSLNVKGKGWYFKGWDNTTNEVTHFSIREVSPPHLVRKNITLHKKGRLSTDYIQNTSCYIYGIEIDGLLFYYTKERLNTPEKFRDAIEQ
Ga0214919_1000137723	F006935	N/A	MEKHYAKEIIAWAEEAKETLLIRKEIILDDDLTDEQLGAIVRIMYRAKARAENESIERCKQYI
Ga0214919_100013774	F042325	N/A	MLKIGNIQKIEGTKIETVNAYWVVMSIEERKYDYIIKVRFDYGKSFGIKHPKYINFKLLRYNEFDSTANEWRMYNDQNVNYVILTTGLLNFKMFVGMLGGQLDSFSK
Ga0214919_100013775	F103248	N/A	MLTIQNIDKIINITSPLPYKWHISKAAETIDVYKDVYGFVVSEDFKIKNVFYLNRESQYVSGRNEPVYRLYKDFDQSKINRWLSLHQISPYFIKQAINDMLNK
Ga0214919_1000137751	F015599	N/A	MKLTIKNFEKLFRKEWDDKNYIEDIEETRDEYRINVWRGHMRHFIILNRRPEKNGYYTIGKYSNQAYCVRYPYWIKHEDIMNIDSLMDKLDLLTDDWKPKLL
Ga0214919_100013776	F074879	N/A	MNVSINDIKQIETQLSITLTDLQRDKILNEYHTIIGDRAEGWDELIELLIIKQATIQILIQQNK
Ga0214919_1000137761	F097324	N/A	MSRTKNYIATIPMKNEEQVIEVKKVLEQIFGWVVLKGRHNNRKSVVTNWSVGKQNDVPWRKAEYIDIYLHPKNPNYNSTKGIHRQNMAYNEVSVVNARILGNMKLGLADGHYNRIQSKKNPAYKAISNSLYGNAQKAVVTKTPKNSPHSGKPYGQISKQIWQFMNSKPDATFTEMKTFYDVYIRGNSSMIEGGSFIHHLQSLRNPSKKRGWYLAKQLNGKYALRGC