Scaffold Ga0214919_10000914

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10000914
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 49896
• Total Scaffold Genes: 75
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 71 (94.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009203	Metagenome / Metatranscriptome	321	Y
F031073	Metagenome / Metatranscriptome	183	N
F088552	Metagenome	109	Y
F094902	Metagenome	105	N
F095361	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000091413	F009203	GGA	MTEHTDNVKNVLDFVAIFSTFGAFLEMFNPLFALIGAVVGAMRIYEMATGKDFYKLLSKKQADDAEHK
Ga0214919_1000091424	F031073	GGA	MLDHLIDFEPEVSNHSGKPTPLEKEHPADVIDAKVNTVEWLKGLGAADTETVVNQAEVQAARASFTNLISSAPAEITHEHLTQIKTPAAVQHLVGMLTAYDWEFVHQARELRGYTVAKLLEECENPNANIRLKALGLLGKVTEVGLFTDKIEVKKTDLTDEEIDRKLKEKLAKFMGVVDAEPIEDIEVSTPSPVTTDES
Ga0214919_1000091438	F094902	AGGAG	MYKVIKTNDGFMVEDQYEGEYVHDEHGNNLFDSEYEAQQLMTIARMRDAIDAIFIAVEEGDAETIAHLALRYKQLFGTKEKQNEN
Ga0214919_1000091456	F095361	GGAGG	MILNQGKLADGLVEDILEAIHKYDDSLHMSTVIGALEIVKHCLIQESIQEAEDD
Ga0214919_1000091473	F088552	GGAG	MSALRPRTLSNQELIKYFAMYVDDNPEGAPIDWQIELLRRFTAVAPEKEFPIHDERQLDLFK