Scaffold Ga0214919_10000853

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10000853
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51778
• Total Scaffold Genes: 108
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (12.96%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015599	Metagenome / Metatranscriptome	253	Y
F038242	Metagenome	166	N
F042325	Metagenome	158	Y
F048996	Metagenome	147	Y
F049619	Metagenome / Metatranscriptome	146	Y
F059964	Metagenome / Metatranscriptome	133	Y
F074879	Metagenome	119	Y
F090389	Metagenome	108	Y
F097324	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000085313	F059964	N/A	MTNEFTDVAYNTARNARPVYINMAATKMSNSVNPNSIVIFKDFMGRTHKVVCRNKPEIKKACEFFSMLKKESAQITRIISDYPMSYGQIDKKFIPSVKRELKGMGLSSKQIENILIMYWA
Ga0214919_1000085314	F090389	N/A	MNIKQFKRHHAIRVMNWCKVNVGLNYRRKYLPELEWHSTGEDCGDYDFEDNIISVYKNKHTSVVEIISTIIHEWVHYKQSTKKYYEYDTIYNYCDNPLEIQANELADKMKWKCKKDLFR
Ga0214919_1000085318	F074879	N/A	MNVSINDIKEIEHQLSITLTDAQRDKILNEYNTIIGDRAESWDELIELLIVKQSLIGVLKDKNK
Ga0214919_1000085328	F042325	AGG	MLTIENIQKIEGNKIHTPHAHWVVMSIEERKHDYIIKVRFDYGTTFGVKNPKYVNFKLLRYNEFSSTLNEWKMYNDQDNRYTTLTKGLLNFKMFVGILGGQLHNFSK
Ga0214919_1000085329	F049619	N/A	MLTIENHIKLTFRQLGKKNFYVESIIESLVSDPITLKREGSYKITITNRKYAITITLDREPAQHNTLGTYFTLHSSKGHKLYISKDEISNMDIFIDKLRLVGLG
Ga0214919_1000085332	F038242	N/A	MLTIKNIKELELNFCHQRGLREITETQNKLSEQFYSFHFGPISDGKGYNKEIEVRLGRDVNRGEYQIFVMGLHLATRSFVTIDDVKTKDGLASEICKILAKAEHWWKTEATK
Ga0214919_1000085376	F048996	AGGA	MLTIQNIKKLVGTYIEKWEVMGAKVDYKRTSQSPDHSYTIRLSRRDKTSVGAAIIIEREAGEFGYNVSVCYEDYDNVISINAVGETELKNKDGFLSLMRGILDAEYDKND
Ga0214919_1000085381	F015599	N/A	MKLTIKNFEKLFRKEWDDKNYIEDIDERRDDYRINVWRGHMRHFIILDRRPVENGYYTIGKWSNEAMCVRYPYWIKHEDIMNIDTLMEKLKLLTDDWTPKLL
Ga0214919_1000085392	F097324	N/A	MSRTKNYIATIPMKNEDQVIEVKKVLEQIFGWVVLKGRHSDRKSVVTNWSVGKQNDVPWILAEYIDIYLHPKNPNYNSTKGIHRQNMAYNEVSVVNARILGNMKLGLADGHYNKMQTKNSAIYQSIMNIHYRTARKAVVTNTPKVHPHSKKPYGTITKQIWQFLNNRMDATYTELKTYYDVVIRGNAIMINGGSFIHHLQSLRNPSKKRGWYLAKQLNGKYALRVS