Scaffold Ga0214919_10000852

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10000852
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51784
• Total Scaffold Genes: 81
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (65.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020689	Metagenome	222	Y
F033788	Metagenome	176	Y
F075657	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000085220	F020689	GGA	MNDEQENRLVVMKDNQVKNLLASLAIAAVGCLAYWAYDAQVRVDEYNTKVKSLTDTIQAITAKQLADQESNLKDVEENKLVDDRVKVLEATVQSQQVAIDELTAKLSRKKK
Ga0214919_1000085221	F075657	GGA	MKIALIWIIWLALVLWWLSPEMNEIKDNINEHNAQIGKTFNE
Ga0214919_1000085280	F033788	N/A	MEILHIIWNVISIFSVIFTVMFVYYFIKNVYVELTLAKDVDKFKKTVKLVYVEQVDGMFRMHDKFTHHYICQAATEEELWDIANTKFPNVKILTTSISAEVIK