Scaffold Ga0214919_10000794

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10000794
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 53984
• Total Scaffold Genes: 119
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 94 (78.99%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013870	Metagenome / Metatranscriptome	267	Y
F021754	Metagenome / Metatranscriptome	217	Y
F023321	Metagenome / Metatranscriptome	210	Y
F050322	Metagenome	145	Y
F053899	Metagenome	140	Y
F055551	Metagenome	138	Y
F057311	Metagenome / Metatranscriptome	136	Y
F081259	Metagenome / Metatranscriptome	114	Y
F091915	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000079413	F013870	GGA	MSNEFKKQCGAGYYWCSTDKVCKPLQEDGMAGGAPTNAVGGGQIAGLGVGPKGEPGVKKKKIASFISYMNRRMPKV
Ga0214919_1000079429	F021754	GGAG	MANKDYTDFKVQKEILLDYLQVMIAIEDWHGVSDVANDLRELEAKQDKNYKSK
Ga0214919_1000079436	F081259	AGGA	MLYNNIGGNAMFKKMIEWFTQPQITEIEYYICSHNPKNTADVEQLINEFNYKRKLQCF
Ga0214919_1000079437	F023321	AGGA	MFLNQPQFPMFYTHNDLTIKAENYIVKTIDFNKQFIDQSLAYFNSITDNSFATYTQKAVNFNQNVAEDAKKIIRSEKAKSPTGDTK
Ga0214919_1000079438	F057311	N/A	MRKKLSEVKKQSLQLEIQSKSKFWHPVCRNGWWIKFSTYRDHYILLMIVSRYTAQTIIRYYENEDDAVAFINFVTTCNAQHVLESA
Ga0214919_1000079442	F053899	AGG	MNKEFKHIMERIQNLNEYEVQVPFPDGFEFDGVVPFDMSISGGTAFVKVVAESLEEARFKANEYFEGKYK
Ga0214919_1000079443	F055551	AGG	MNTSKANTNKPWLSDEYDMPILETEEMWSQTAIDEYKEDENVNKKEKD
Ga0214919_1000079453	F091915	AGG	MNYALMIYTVVAMSGSNASLVQAHDWRYLATFYSSEQCKDAAKTMGISSERYRCVPAK
Ga0214919_1000079495	F050322	GAGG	MNEYEWQERSSAHFYYDLDTGKVVGHVSKMVANDIYIALVYTGQYTFTLDDERHLGQYIDLSSAKDAVEHFWAIQNRTLLEG