Scaffold Ga0214919

Basic Information
Taxon OID	3300023184 Open in IMG/M
Scaffold ID	Ga0214919_10000588 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023184 Open in IMG/M

Scaffold ID

Ga0214919_10000588 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	61786
Total Scaffold Genes	102 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	69 (67.65%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

61786

Total Scaffold Genes

102 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

69 (67.65%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013393	Metagenome / Metatranscriptome	271	Y
F021050	Metagenome	220	Y
F029985	Metagenome	186	Y
F030372	Metagenome	185	Y
F050889	Metagenome	144	Y
F076849	Metagenome	117	N
F102401	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000058825	F013393	AGGAG	MRHVSGFSNSTKIRFIINGFGMYGTINDIYTKTATASHGAALRLAIQKLAYDRRHSSFSGEGRPVGVSITHEGHNVQITLMAN
Ga0214919_1000058835	F102401	N/A	MFWQHSQTVSTFCTAKALYTSMRHFLIIAALIATGAWAHVPVHMNTDQVTRPRVPRIKLLRSNPHRFTAIRLQGTDPYDAPDDDYICTNLNRRPKVAPPADSADDELSPYVQVRLAVARSRAMARYREIHA
Ga0214919_1000058842	F030372	GGA	MNKQTKQLAEQAGFVLDELPDSVLQPLETFADLLRAANTREVIALCANTINNNLNEQKQRTKHRWEIVEALVIILLLIVWATWWYIRLHA
Ga0214919_1000058848	F076849	AGCAGG	MLDAMWACESAEEYLNWYHLLDAEDQEMADVLQRMIILETMDEMLEEVSDGYTDIRSYLKKFML
Ga0214919_1000058875	F050889	N/A	MKNLYSTPEARLDTILGEVSFWARMQRCRTSEEGEKNCTTGADTITWFRDTWGIQLLPSDDTIFGFQRQVNIVDEQKYMIFLLKWA
Ga0214919_100005888	F029985	GAG	MKKYGAVYRTVILVLLLILCCSAIVSSSPMYGGNRPSVAQELPAREREVRLNHGVAECVRTAWIGDVNRRTLICVKYRLKKEVK
Ga0214919_1000058893	F021050	N/A	MIRDWDINKVIWECQKMYRAANDPYMTGFVNWPCKQDLYRVKFAVDEMLRGIGHFAGETEWLDEQEKLKMWKVLKDGN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214919_10000588

Overview

Ecosystem & Geography

Associated Families

Sequences