NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10000585

Scaffold Ga0214919_10000585


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10000585 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)62008
Total Scaffold Genes92 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)76 (82.61%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000346Metagenome / Metatranscriptome1253Y
F012101Metagenome283Y
F017442Metagenome240Y
F017592Metagenome239Y
F024742Metagenome / Metatranscriptome204Y
F047462Metagenome149Y
F065547Metagenome127N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1000058517F047462AGGAMGQVKALLHTCTECGDDIDPRRVALGYRLCLWCGEEAATTERRGWTVVQEYTKGNYQFITPTAVVVTLKQTNPKEIRT
Ga0214919_1000058533F017592GGAGMYDDGDYGGIDEFMYWVTLVILFLMTTVFLGAVAGLMYWTLI
Ga0214919_1000058538F024742GGAGMNKETQRIMEALMLIYGSDLQAATITVLLKDGDTAVRFITLTIPQKETEK
Ga0214919_1000058543F065547AGGAGMTQPNKQHIHERLGMSVEEALNRLISFGQLNHKYKQEHGESINPQHLDAVLNATKEKNA
Ga0214919_1000058544F017442N/AMTTPSKRKKKPINFYDPFQRVDPKLLEQMYRAAQKEKRKELPEALL
Ga0214919_1000058564F012101AGGTGGMAQKNVTAPRLPAVTPEYDFAMLSQLLNVLRLYFTQLDNAGPISASSQFNGTEVVSGLSFFPTSGTSPSLPTQANLANLRVGDIYYDTSASNVLKVKT
Ga0214919_1000058580F000346AGGAGMDKADLKQDKKMVASMINKHEKHDHPGKPMTKFAKGGKTGEDMMKYGRGMAKVMNQKSGRGG
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Institute for Fundamental Biomedical Research
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