Scaffold Ga0214919_10000566

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10000566
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 62833
• Total Scaffold Genes: 82
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 71 (86.59%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Associated Families: 15

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000332	Metagenome / Metatranscriptome	1283	Y
F002286	Metagenome	574	Y
F002653	Metagenome	539	Y
F005233	Metagenome	407	Y
F005234	Metagenome / Metatranscriptome	407	Y
F009203	Metagenome / Metatranscriptome	321	Y
F010672	Metagenome	300	Y
F021488	Metagenome	218	Y
F023041	Metagenome	211	Y
F045603	Metagenome	152	Y
F064494	Metagenome	128	Y
F067421	Metagenome	125	N
F067425	Metagenome	125	Y
F079675	Metagenome	115	Y
F090308	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000056610	F021488	AGGA	MSDASFNKEDFDRIFSMPKNEIKEDYPMIRNAVLEEVALEFDAMRIAFGDTAHSFATYVRDMKS
Ga0214919_1000056613	F002653	GGAG	MNYNNYSGRKEVAYEDMMTQEELERRVKGMSDEEQAHFKLLIHKLVMCYGEGRAQAVVIVGRAEDQLAGVVTLNCNEMEASQLMLAANDFFGFLNVLDAPPKENFN
Ga0214919_1000056615	F064494	AGGAG	MTQDEIINLIEANGLTLHGDIEHFAALVADHVYAKYLETPEPKQSGTISITMPVPIGYLCENAVGHKYFRWKKPPSTYKPIPLYTKEKK
Ga0214919_1000056623	F002286	N/A	MAYSQKIIDEVAKTPKSLGNQLGRWAIHLDFPVTKIAYALGVSRQTVYNWFTGTEVFVAYRNRVEFLTHIMKTSRTADEAWRKICTEYNLDPSPRKS
Ga0214919_1000056637	F000332	N/A	MRWLLLLLLLLGLVGAVAKNGCHVREFYGIGYTVHDPTERHKQMMAWLDQNADHCKSTEYVVIWNNLAEWSGSADSTWLRAKVVHGYKDALEREKK
Ga0214919_1000056650	F079675	GGA	MAKINNLPASAYAKPHTMSGAPVGISENPGSGANRSKLDNFDVSVGNISKSAGNEPTKTSGIKMRGTGCATKGVMSRGPMG
Ga0214919_1000056659	F009203	AGGCGG	LQDGNVDMTEHTDNVKNVLDVVAIFTTVGTFFEVISPVFGFIGAVVGLMRIYEMATGKEFSTLFKRKKDDAIDK
Ga0214919_100005666	F023041	AGGAG	MNNPPYDTGKVKIGLLYTQPPPECTPESDWVQGVLLGDKRVMDDLLLTTIQSIGLIAFIVIVMLLTGGTSNA
Ga0214919_1000056661	F005234	AGGAG	MMQTDVKSGAAAANATTTIFAGPARIKGVSISYSTGATVVLNDGTGGTAMFSFTAPAAAGSIYMVFPGEGIKCSTNISAVVSATTTAVVFYG
Ga0214919_100005667	F010672	GGAGG	MPDIQTAFKQALSKTLQQWDDDGETVSPPSTTINTTVNKTVSTQEIPMKKTFGVTNNVSRVTFQYIKDNPGSTRKEIIEALERQDFRSDSVSSLIAQLRRNNMVHETNNLYYADVDEYRPIKSLKAIKKMEAKAEPVPKRKYTKRDVTGIGALLKERLENMPAPSQAALDASAAFSTAPAPQRRAFVSLVRTRSPEDILKDMTVYQAHELYVHLKHMFGG
Ga0214919_1000056671	F005233	N/A	MLEHLINGEFEPSVVDMTTATPLPFADAAPADIIDAQVQTANWLKELELDDDEAESKADAQAARNSFASLVTGQPPQNTQQALANIKAPAAVQHLVGMLTAYDWAFVEQARELRGYAVAKILDEVKHPDARIRLKALQMLGTVTEVALFTERVEVKKETMSDVELETRIKDKLNRFMGVIDVVDVTQEKTDEA
Ga0214919_1000056675	F090308	GGAG	MYETYIKLTPNELHNRLVERKLHESEIERIKAEVADLKESLRVSRITKTQREAEWLKVLQPLRYEINNAKVGMKYGGEKVSPERALAFSEYIRIMEKLVAMLDAPSKALDHTPIQIARDKGLPNDGEHWTDWIPARVKDKIALLFDAVPITPRGKRKIPFQRTMLPHQHETAKVRLLTKTRKEMESIMRQAGIQPTQARLDKIAKMKRALKIIEALDKNEAVPATWTKLNLGGD
Ga0214919_1000056676	F067425	AGGAG	MKLSVTMLDNNTKSAVINVGKNNGYIEAFVWEGILSLYVFNKEGDVVHNYAITAKDLRAEGGCTTPKFEPAQEHYEGESK
Ga0214919_1000056678	F045603	AGGAG	MGLDINILSVHRAVTTKPADAYLGSRYDANPRWKQVAYDRDAWDLHELLAKLYHKQGGTQEEFNNVNVRLYKRDLHLFYAPLAETIFEHMKQGRVVYAESSF
Ga0214919_1000056681	F067421	GGAG	MRVVRIRIHGRYTAPFNNPFTANAVVMPVELSDSMRDEVLKKYKDAHYVFDAGNPIVGEHNTFEVYSFDVIDDMEVSLA