Scaffold Ga0214919_10000511

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10000511
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 65840
• Total Scaffold Genes: 89
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 81 (91.01%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000843	Metagenome / Metatranscriptome	864	Y
F001715	Metagenome / Metatranscriptome	647	Y
F002405	Metagenome	562	Y
F006894	Metagenome / Metatranscriptome	362	Y
F019309	Metagenome / Metatranscriptome	230	Y
F078640	Metagenome	116	Y
F081271	Metagenome	114	Y
F085621	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000051111	F002405	N/A	MVLEPDWVFPFEVMEVGDSFFVPTLRFAEMIYSIDSGAKRAGLRVKSYIVIKDDHIGVRTWRIR
Ga0214919_1000051130	F081271	GGAG	MSRYILAGFESEELEQSIRNSDASPLIRDMCFKFGLKVLAETELGGIKQAFQMCLTNGMAVGKVYTNMNADNKLEYCYRTPYYKKERGSSDEDKQTLRSTKVSSLMATLSRVEAVITIDKLIGKKMGKLVDAKDIMEKSMGNSGKATYELSADEIHALLCSFLGESPSSNHVAVDTLKCKKVLDKYNEADRVRVKKLEEVDRFFSNPFYMIGADAFGHFIVGKVKVTGEKEYEIVEQFKRYKSVDECTEIIPVMTMTKLAHEDKHSMQNGHIPIADMYDENLDAVFFYQHKGTHYDYIWMATPC
Ga0214919_1000051138	F078640	AGG	MNRDDMTHMEAVFLPIDRDKPCLPYDEFITEGGRHPIGGDIESKIGGHYYAKYVFPNGTEVSVVCGQLFYSTIDAPYEVMFEDEDEPHGYQTDEELMILLAKAIGDM
Ga0214919_1000051141	F006894	AGGAG	MNDFFWNYRIVNTKTANGGEDWYCIQEVVYSVDGKPESFGAPCLGSESMESFGDVWFMMQEAMTLPPLQEEDFNHE
Ga0214919_1000051142	F085621	AGGAG	MGRMKDLLIDIDNDEELQILLANFKPTAEELQAELDELQAHQMSLPVVSVQPEYKVYLLMKNGFPQRSYTDRSLAFYECWICTMGDEALGAEEPDDWYVVEIMHDESTYTGE
Ga0214919_1000051146	F001715	GGAG	MEQIMPYIEENIPLPKNASDAFPDLSPSEELTMRANVVKLMSDLTGNPLTPTQENADQARELAREMITDPKHRPDFSKYPNETLAMLAGMVAQMNVSIVEELSDLKMYVVNRLVMEIEQAKDPKTRVVALGKLGEIDGVDAFKKRSEVTHKILSIEEVEKELLETLTKLEDKAIDVEAREVVRNEPKNE
Ga0214919_1000051149	F019309	AGG	MMSYEIKKFTEVAIKQIDEKVKQLEDALGARAAKSYDEYCGMCGEITGLLIARRYITDLTKNMENSDE
Ga0214919_100005118	F000843	N/A	MPLYQITPNELPQIWPVAAPLLQKAIDLDPDLNKIEMIEYLVRTGRTFLLVWEEPGEGITGAAAVDIIDMPLERIAHGNLMGGKGIVRPHVIEELYKWMRLHGATTAQLWAKGTLVNMYEKLGLEVTHQVMRIKL