NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10000276

Scaffold Ga0214919_10000276


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10000276 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)86660
Total Scaffold Genes104 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (8.65%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006142Metagenome / Metatranscriptome380Y
F097351Metagenome104Y
F101158Metagenome102Y
F103254Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1000027628F006142N/AMKRKNKLILEFTEFNMQRMNPDSAAGAIGGVDDPSLSTNAFDKHADAIRQAMSRVNDILYNLAGTSAYRNLRSKLGLESQDIQKMKILRIVKSNSIFYDAYITFVIDDYEYWGVIENIMSPNPEFTSEVFKDFDLYQSKEWIIKIKGLVIKTIKTWLKPEPGMYKLLNDDLYCYSTETGKQLRMEKGIEIELIRAHDNKMVVKYETDYYNLVGDNYIYFNWWFEKIEE
Ga0214919_1000027631F097351N/AMLIGKKGNLEQGYVYAPYIPMTTAQTIVGYGSKNISRKRKINNIFDLGLDIKDEFSPSKSIMSRYSKKIINAKYYGAIEIKKPTY
Ga0214919_1000027637F103254N/AMKLKPIKTLYDYNQAQKYLESIFHAELTEEESNNVAILEILMEEFERKGKVSKEDLVIEPLIDYVFDLVSNASQYEEEGILERGLKLGEEYGELSAEILKLKGYKRTTEDEGRIHYNILLESTDCLIMIFDIMTQMGFTKEQICDMSEKQVNKWLKNIEIK
Ga0214919_1000027698F101158N/AMKYLKKYNENQEQQDPEFAIAKIKGRYPDQSEIQDMLNDEINQWKPDEEDPEYYSRTGNGEAEDVIINHMIGWFEKKYYALSEENFEKVKELILKEYEFLNFNY

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