Scaffold Ga0214919_10000262

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10000262
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 88586
• Total Scaffold Genes: 118
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 85 (72.03%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000264	Metagenome / Metatranscriptome	1424	Y
F028150	Metagenome / Metatranscriptome	192	Y
F082150	Metagenome / Metatranscriptome	113	Y
F091304	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000026250	F028150	AGGAG	MNWLKKRIMAILSENFTFLGFFVAWVVLEGSAKTVVGYVTLASIALWFMTIGIREDKE
Ga0214919_1000026256	F000264	AGAAG	MPMTMIFLRRKLTNNLMAAKLYTSEIFMRKRYVMDKKTPEEIAKECGCTVETVYVYLAKFGLRKSKR
Ga0214919_1000026274	F091304	AGGA	MLNCKKCNGRLFIDRQYSGLQHMEIYCMVCGSRIFYHPPTESEEGRWLLAKELFRAKHTITQL
Ga0214919_1000026278	F082150	GGAGG	MGALDWANYERQKNNTVNKDINAAKTAEAISIVGAEQVAARGGVNSQGYFNDVPEYQQLTANERASVTLSNGSINTQGMLAILDKKEREYFGDIKYNRMYGIHPTNNEPVTFLKATPPAPEPEMFSARMFETSPLVKAAPIDTILFDDAAVPIEIMSDLIFENIGGQELISIVRSDTVNGQKISYQPIKNLSAIQQQYNPNNILGLQQTANRFFAGFSIKLEDKIPEVGNGLNGENVYFDETTGDLIIEFVNLNNDEQIETQITVNGTIYEANLGDYTS