NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10000212

Scaffold Ga0214919_10000212


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10000212 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)101009
Total Scaffold Genes193 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (18.13%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067415Metagenome125N
F077282Metagenome117N
F080896Metagenome114Y
F102551Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_10000212106F102551N/AMGRYSKEILDKIDLIKEIIVSRSIIRNIRDDIKWELEGDYEVSTGKVYELVLYLKVIDQDCLECDFEPENILNEIHRYQSSIHNSISKFTFNRNLDIVKGVSGSLRGILVSSVNYSLETITIEYGIFIDTVE
Ga0214919_10000212114F077282N/AMKIIITESQKESLDYYQLSNCVKRRMDLDGVDDIVDEAIEEFVSLRDTLEGFIDMTINYTYDQLDIEYGIEKCWGDIYWDEFAIPIKRFLNSRYESKLKEYFENHYN
Ga0214919_10000212150F067415N/AMKDRFNPFLLRRLKQIDDLVDEVYDEVTPCDYDEDKFYIYFREITNWIVENFVNNNNLEDDNIAIDLHHLIRERYFEEFLDYFENAQLSCNEDLNESEDLGDFNYNNDKEEKSDKKKVTPSDLKKIEFIADYIEGVSDSYLNKQNYKPCFVSVQAGYNKFYIVIIVTDKKYTMDQYQSFLEKKLSKTFKGMDIFVLTIDNKYDDDDSIRKSCEEHYNHISKLPNTITIEF
Ga0214919_10000212163F080896N/AMSNKINKITQAIFIYLEDIGPCEVSVHCYDENIENVGSFQPTVLFDGQTHNRNKKVPMIGTFRDFFIKYTEDHMRELTNLLDYDLNDYHELVFRIYPEEKKIDIKSYCYYLQYTQHEYQEKTPEHIAEMIDDDEVSWFSLEFWGGSDDFAFHYNNMDGDADPGFVRQFEDYFVKFLDKKDGGWFKDTGSEGTFHVDRNTIDLELNVKEEEFRSSGFHKEIKL
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Institute for Fundamental Biomedical Research
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