Basic Information | |
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Taxon OID | 3300023184 Open in IMG/M |
Scaffold ID | Ga0214919_10000185 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 107108 |
Total Scaffold Genes | 102 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (10.78%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F037691 | Metagenome | 167 | N |
F071162 | Metagenome | 122 | N |
F088340 | Metagenome | 109 | N |
Protein ID | Family | RBS | Sequence |
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Ga0214919_1000018562 | F037691 | N/A | MALIVASLLQRDAVLRSIGATNSKIYEILSEYMCGETYIKSKMEKLDIIYKLEVIESYISEIPETVHEKTSIHKALTGIHDMCTKLHNELDAILKKIKMHNEKYFYYLRTFDISSDLSNLETHVYNLNHRFKMFLGLMNATFL |
Ga0214919_1000018584 | F088340 | N/A | MIPLKKIDARDLLVGKQYLIEYTGPHVVSNPRFKGHFIGNILPECEYQCTLSKFTNVLQTGNVSIPDLKLQDCFYNYYEADALTRAATILLLQRITGDENFTFDNY |
Ga0214919_100001859 | F071162 | N/A | MVHIKGRSLCRGKCPLPVFQYNIDNANTSQVPRYVRNSIIITTSRFQGGGRFQFANNTLNAYGKWAGCPGGSGPGYSSTNQYVPYQNCSVGPAIAGPQTLCFSRC |
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