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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023184 Open in IMG/M |
| Scaffold ID | Ga0214919_10000143 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 115392 |
| Total Scaffold Genes | 126 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 39 (30.95%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F017268 | Metagenome / Metatranscriptome | 241 | Y |
| F047507 | Metagenome / Metatranscriptome | 149 | N |
| F050171 | Metagenome / Metatranscriptome | 145 | Y |
| F083776 | Metagenome / Metatranscriptome | 112 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214919_10000143120 | F050171 | N/A | MGMFNYIKVEQDLPLNDELKALNVDFKKEEFQTKELEENLMSTYIIRDYRLFELKITSHWEDNPDYVKDGSRFSEFFNKNKLVKDSEEEVFRDDYTGTFTFGTYVLGQDKESYDWFPDWKCVVVEGLLTEISLVKPVEKNSSGTRIELDEKFKKDLDDHERKMRCPVYSFYFKYYVKTMNLVEWKLSIGIVKIINFLNWLQWKGIRKVIKILTPR |
| Ga0214919_1000014373 | F047507 | N/A | MINKLNRLWNWKSKTLLVGLALIVSWISCLKIGFELKKYNSITNLPNSCFVDAMIYASRCNLLLVTTSDSWNSVYGFTFGYKDDKEAVLGHAVCVFEYNNNLWMYDPNWGTSPICQIGDRKRYKEKIKLHINKNYPIIVIEDFMLNDWTYVQKTKKNKMNKTYQEVSIHLDENKKE |
| Ga0214919_1000014380 | F083776 | N/A | MIVSDRDIDFFAKKLGLSAEKAFSLIQDPECLPEILNKICEENIDGIIDISFPVFAEITIIKYSKDLKYSFEEKEYVSEAVGLKFYDLIGESIIQKSILEFKHDEDTAKSLLVFLGFFYKNLNKPRRAYPSENTYYNIAKNGFENSDKIHISEHLKDWIKVLRIIHNEVWF |
| Ga0214919_1000014381 | F017268 | N/A | VNLDITLLFNLILGALSFLGGWLFTRVFSLFDKQENLMKEINDKTFHDFIALRKEMETEGRKHQQEIADLALKISTTYVTKESFDDYFDRIESKLDRNFDMIQNHFNRNNKN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |