Scaffold Ga0214919_10000127

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10000127
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 121846
• Total Scaffold Genes: 165
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 95 (57.58%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030663	Metagenome / Metatranscriptome	184	Y
F044299	Metagenome	154	Y
F056408	Metagenome / Metatranscriptome	137	Y
F089835	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000012745	F089835	GGAGG	MKFYSPLDERMNADIDAIIEKLQAAKTSRTYLQRAALVGKVAEQCQMFEFYWEDRLYNLM
Ga0214919_1000012747	F056408	GAGG	MDEAEITVNQQIKKLMGQTLDDKFKETWSTMTPEDLEKFVKHFAELLVRDCADVAYRFDGLTLGQGYTIAKHIKKNYEIEL
Ga0214919_1000012749	F044299	GGAG	MNKISQYLMSINRPPYVAGRRVGQATPCQSYSEPAWFISFLDGYTHINNPVFTDEDGLNSAPTIHEYATNLGYEPCMN
Ga0214919_1000012750	F030663	AGGA	MYELIFTFLVVTKAGLPGFHIEYMGQFRAIEDCEKTRVVMIEYTDRLVRENRMFPGVFECRKVQR