Scaffold Ga0214919_10000108

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10000108
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 131507
• Total Scaffold Genes: 143
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (32.87%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007255	Metagenome / Metatranscriptome	354	Y
F009382	Metagenome / Metatranscriptome	318	Y
F009453	Metagenome / Metatranscriptome	317	Y
F010014	Metagenome	309	Y
F014361	Metagenome / Metatranscriptome	263	Y
F015306	Metagenome	255	Y
F022821	Metagenome / Metatranscriptome	212	Y
F037077	Metagenome	168	Y
F062384	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_10000108115	F007255	N/A	MMPTWFPWIFVGGIVFILLSFIGTKYRDKDYKKIQFLQDFISGSIFIAFAGFLVPDLFPKMELPAEMPVMFHGDSLPDLDLQVGPPRLFGR
Ga0214919_10000108116	F037077	N/A	MPTTIYDSSLLTSRAKNKAESGSFINRITRASNPNTGYAAPLGIYDQSIINTVKKGQMQYFRKGLGGTTIVDNGCPCADVTGACATN
Ga0214919_1000010818	F010014	AGTAGG	MAQPVFPDRGTTSMMNAFPHPQFITRTRREVDPIDAINARQFEHWQTNGKSGVYNRPDVNKQAPFYDMAPNTTRMSDRNYRTQPRYDVDGKKGVENSYFDKYDTTSDARNMARELKASVYEDKNTGFVQESERLLQRNFDSRWLDPTVMKQQAAAAEELRPKMDDIRQFYVNRGTSAPKGAASP
Ga0214919_1000010824	F062384	AGG	MSLPVALTAASASAVLSPVDAVLQIFNSNPYFIGIMMLILNLGGRFINLEVTKNQELFLQRPWVRRILIFVVLFVATRSLHVAFWTTVVVVLLLGYLFNENSAMCLFQGGAKGATCANTPSGNAGHVEEGMTSEEKEILQRLMAKSQRFNKPKKDDMPTESDDDVLHTEIYAANLSLLRSPF
Ga0214919_1000010831	F009382	N/A	MAALALDSTSGFARSATWQSSIALDQPGFTRDTRPNLFATSNGYHSGEAYRSAHNAYVQPVKEAYPARDARYPARAAAIEDGRLVTDYRPQCSKNIKTGQQFNTKVWLINHAENIMDESRKRQVEWTGASLPMANTVPPPAAVVHSTPFYSEVNPTHLKHGLGVERANAAAPELFGTFAYAPTISEMQMNRKNIGITTHSEGGRNSVRGKI
Ga0214919_1000010859	F015306	N/A	MSKSITSTAPRFEKQHVPRFHRLDTAHISAIESLYKSYPFLKDRMEIHMPFSRAKPTFSTGTLWLWPKFDRRPVGYLVFLEGFAPCIWYPERQEGMTFRWQLPPNFSLHGPTVCLANILAGESLLQIEDIVIHQGKDQWSTKTFSERWLSLGEFWQSIPSDQPLLAFKPQIVKPLALSDWSSHYDPSIYWIIQPDHQRQPRWYWKDTVTERVHVNYIAPVLKRSADMAVLLCANCMPYTKMNLPDTYSLFSQEGENLGMASIASMNLSMDLREKMKSQMGLGLPVEVRWNDAFRKYQIVRIMPVESPITTASFFYHLHL
Ga0214919_100001086	F022821	AGAAG	MTEQFVVESEIIIRAVDKPFHERQTLGVFATADVAYQFIEKYVADSKDLHTYFSRSIICSKDDYLECIETGRLVGINIVLGQFEDMIYVRKTLIQ
Ga0214919_1000010871	F009453	N/A	MATAGTLLSDLDSKAPVFSKDDDLVNKILADMNIPSQSNPIMQPAMQQQQHHQQPPPSGNGQRMINAPNPNSTYPMSSDPATATAHMIGKDYPTAADFAGLMPQYSHGGSHGGSSYEHVSPYMQPQQPTLIETFKGNMYSDIVSQIKQPLLVAMIIFFVSLPIINVLIGHYLPSLLRMGGDLTTAGLAVKSVFGGFLFWFIQKILVPLMMI
Ga0214919_1000010890	F014361	N/A	MSLLSAFNTQLVNLFEELCVTFPEEKDIKMATEGIKGARKINPRLILDLFRDHVYKDCSEAIYARDIVHFRNIAQKKIASQFNEMISALVIFDKHWETMGSKNQETIWQYLTVLCHIAEKAHTQY