Scaffold Ga0214919_10000102

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10000102
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 133340
• Total Scaffold Genes: 206
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 83 (40.29%)
• Novel Protein Genes: 33
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (33.33%)
• Associated Families: 33

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007359	Metagenome / Metatranscriptome	352	Y
F010746	Metagenome / Metatranscriptome	299	Y
F011914	Metagenome / Metatranscriptome	285	Y
F014486	Metagenome / Metatranscriptome	262	Y
F016774	Metagenome / Metatranscriptome	244	Y
F017268	Metagenome / Metatranscriptome	241	Y
F020649	Metagenome / Metatranscriptome	222	Y
F022820	Metagenome / Metatranscriptome	212	Y
F024040	Metagenome / Metatranscriptome	207	Y
F024058	Metagenome / Metatranscriptome	207	N
F024954	Metagenome / Metatranscriptome	203	N
F025679	Metagenome / Metatranscriptome	200	Y
F027756	Metagenome / Metatranscriptome	193	N
F030670	Metagenome / Metatranscriptome	184	Y
F032536	Metagenome / Metatranscriptome	179	Y
F032548	Metagenome / Metatranscriptome	179	Y
F034466	Metagenome / Metatranscriptome	174	Y
F034827	Metagenome / Metatranscriptome	173	Y
F036564	Metagenome / Metatranscriptome	169	N
F037078	Metagenome / Metatranscriptome	168	N
F039478	Metagenome / Metatranscriptome	163	Y
F039497	Metagenome / Metatranscriptome	163	N
F044916	Metagenome / Metatranscriptome	153	Y
F047507	Metagenome / Metatranscriptome	149	N
F048101	Metagenome / Metatranscriptome	148	N
F049419	Metagenome / Metatranscriptome	146	Y
F056412	Metagenome / Metatranscriptome	137	N
F071966	Metagenome	121	Y
F078229	Metagenome / Metatranscriptome	116	Y
F082109	Metagenome / Metatranscriptome	113	Y
F082149	Metagenome / Metatranscriptome	113	N
F086551	Metagenome / Metatranscriptome	110	N
F096610	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_10000102102	F034827	AGGAG	MKYVISSQDKEAMIDFDKLKEGEVFSFFDPESVQRGNHAIYMKIRVPNFTGANIIDLEDGKAYSFSEKKRNTINDPDEKQGNKVYKLNAKINIIII
Ga0214919_10000102103	F078229	N/A	MNKIKYTYYVEQDKDKDGNYVQSFSIYKVPVVKTIRLKTFKKLSDANNFLDTYEGD
Ga0214919_10000102104	F030670	N/A	MKVIRYLKELEDEFGEPLNKWAVYEEQITANGNWAFKDAKILKTFTTPHHARNWMENDSKRDY
Ga0214919_10000102108	F027756	N/A	MKLKDLIDRKILFINFPINRYSLQEGKVSEISPAEKCIKINNDWHLINNIRIIELFSKEERPSLGFN
Ga0214919_10000102109	F032548	N/A	MNYNKEMDKAIKILEELVIQADEDCPQDCRTMHFVNALEQASEFIMEHKNTK
Ga0214919_10000102110	F036564	GGAG	MKLGRICVDLNYIVDMDNDDMVAHATEALYEDLMQGIKYGDLANWIRISEDKDAKEDMIPEFLLEEKND
Ga0214919_10000102112	F044916	N/A	MGKVKSKIEKGLDKEQKTFALMAKKIIDAIKDEKELRAFAKTSLEILYKDNPNLFSDHAKLKLKKK
Ga0214919_10000102117	F049419	AGG	MKLPKFDFLNLATTYILFGLIYGVIVAVVWNYLFEPISNIHLSILQGFGIHLITRILFGNTNTNYVSNFYTPKTPDLDKIDSYLKEMQADLDNEADEVERQYEDLDKKD
Ga0214919_10000102119	F096610	N/A	MSYIIQYMANRPKTYFVKMTDNTNGTITISEAKVLDKVNQHTRHWRSFDKRKLTSKLRSSDLVTS
Ga0214919_10000102122	F016774	AGGA	MKSNKIKLLSEHLTTLNYWRDQLLALERTHYNRDYEKERTCRNMINKYLDDVLDYNKNIKKNTKN
Ga0214919_10000102126	F082109	N/A	MWTPIEIFALTFLLNHSPMASERLSVKEVMQNREALSLIESVGLRNDF
Ga0214919_10000102132	F048101	N/A	MKKKNFKNVKDFLKTCSEDEQEYIYGLFNNAPAEDLIELLFEHLPAKNTIKEIKGYREEMKEEMEWDDAEAKKLNKRKCDCDFVGCQGC
Ga0214919_10000102138	F071966	N/A	MSLLGIAFDVKGWIFRPFYLLLGLLYFLLLLSLLGSLYIVSLSRTTLENVIKDIEKERNKYKRKK
Ga0214919_10000102140	F011914	N/A	MITDNQIKAMSENELSYLYYALNTEWNSLNMGYDFDWYILKAFKNNTIQKILNKHSANLTDENKGITIEILKKLEANI
Ga0214919_10000102149	F025679	N/A	MTKTFKIGEYAVGGTIRVSIPKTLTTIKIDVIDSNFKTKKLLNQYIYYSFDRNRIDRDLFQITSSYWTDKILEYISKTMKQSGEWIGNYHNPRLFLDRAI
Ga0214919_10000102158	F010746	GGAGG	MTYKCSVSGEAISPERVEALKVLGVPESKWTNIKHSQVKKLRGVYAGDDGSNDIVICDAVDGGSLFDNSVVVEEVE
Ga0214919_10000102163	F007359	N/A	MTLIKQNLGAQWVIGIKGKPDKIKQYHNRIYNWGGTNGNLKWMSNNFAYFWITMEKLERVMFKYMSSGMTNKLGKRFRGSKSGFKNVILNRVKNTINNIKVENFLRTAQEQDFYSLGTISAEKLDTDS
Ga0214919_10000102167	F022820	N/A	MKHENRISKILEKKILKDEDPKLISEIERYLAGLEIHYSKWAKAHPNWKESEE
Ga0214919_10000102172	F014486	N/A	MKIENILKENLESFYPWSDNDTPPLDTNKKTFVEKEKETLEDFEGWRACM
Ga0214919_10000102175	F024954	N/A	MRFNSKKYLAKNSICDKLNSMKDKEMKNTIESLVVGKYYQIKNHIAICEMLNSTSNKKCLSRISGVGSVIAFYDEVTEVEMTPALLKECEERKNGTMSFIGDFNATSDYKGD
Ga0214919_10000102176	F086551	N/A	MKTKERINKMNIQINPELYENKNIYRYGHEKLLVKLFPSTIGWKTKTATAEILEGEDKGKWTTIYMRKGLYPVDAQ
Ga0214919_10000102178	F024058	N/A	MTHRMINWNFHRRQMRENMRKNMDSTESIITNSNNTPTYFGEIYLYEGTLVKVSYKTSANTAVVTFLEGIDKDKVGTINLNNAKLVKENK
Ga0214919_10000102179	F056412	N/A	MNKKLTKYEILIANLEKVSADMKKANEETAKRIDQIFEKYQQKVSLAHHNCMMVNEKQIEEIACNSAEIC
Ga0214919_10000102185	F037078	AGGA	MKNQLNITKQSFGETTAFLLEGGKGRITSFHNALYNWGATNGQLHDMGNGKAFYFYAQPDAVLHALVKIALHSLCNKINAKGMKGGLMSLAKIKAQGQFDNIIDGRFLRTSVSNDTYGFGTITAEKPSDYCGAVSSGRE
Ga0214919_1000010238	F017268	N/A	MNMDIYVIFNIVLGALSFLGGWLFTRVFSLFDKQETLMKDINDKTFSDFITLRKELEVESRKHQQELADLALKISTTYVTKESFEVYFDRIEAKLDRNFDIIQNFVNKKN
Ga0214919_1000010259	F047507	N/A	MISNKLKVKKILSKLWNWKSKTILFGFVLIVSWTSCLKIGFELKKYNNITNLPNSCFVDAMIYASQCNLLLTTNSEVWNKIYGFTFYYKDDTKNIIGHAVCVFEYENNLWIYDPNWGTSPICKIGDKRQYRQKIKLYINKTYPIIVVEDFMLNDWTYVEKIKKNKMNKIYNEVSIHLDEDKKE
Ga0214919_1000010261	F034466	GAG	MDNRLRNLLLNNYEKSLPSKRDTEDFISNFHQYRVKKKSERKTHFFLVAVVLLLLASLGAVALKETNNKLDIQTSSGVQK
Ga0214919_1000010264	F020649	N/A	MLLKIKNWWSNLKSYDKFFFITFVPAILFTLWGLSDLYINYFDLLSREDHLQFFLRFAFPISLATLITVLERNKRRKLAKGIKDYLDK
Ga0214919_1000010274	F039478	GGA	MNWVKILNFIDGIFPEEQLQPVLGTLYKIKGEELPFRYIRFANDSYPNKGIYHFKHHQLKEYKFTNLDKVEREANKEEVRLYNLIKSHINETARNNQYKFNDN
Ga0214919_1000010288	F082149	AGG	MKLGLHIDWCIGRWFGRENNIEINFYLPTIFLGYRKDDDDKWFGFKLNLKSDISFNSYEYGKIFSLIFLGFGVKLSKFSI
Ga0214919_1000010289	F039497	N/A	MNEENNFNSDAGNQLRETLFKDIVRYAKESDMTAFQAIGVLESLKYDLLNAMREANTEDE
Ga0214919_1000010295	F024040	AGAAG	MILKMTKMTKRMILHTDMNFFVSGHNWFAKVSLDKDVKKSDRYTEATTRAIESLLDQEEKEGVDLKVLNYDDYGLGVITLTYDEKHSKKEGEHRVMLTSNILANAGRWDDYKIVKDYEEQCKEQGL
Ga0214919_1000010297	F032536	GAG	MSERKTFEELMRSFRFHKNPIINWFLTEVNYYSHTYLNVKWGLKNKFQRLIRGYSDSDCWNLPQAIARFILPRIKHLRKNYNSLANRNHLITIDGKVIQYKVDQKNLELKEDSTGYVEGYIDKEINKPISLDSVEYEYVLDEIIFALQMVIDEDSTDIGNLDRLYEVYPEGFDPIEDRQMFLTPQGDGTSLVEFENKDNIQPDYSKLNKAYERQRNGLILLGLYFKDLWD