NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10000068

Scaffold Ga0214919_10000068


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10000068 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)161029
Total Scaffold Genes134 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)110 (82.09%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011665Metagenome / Metatranscriptome288Y
F015338Metagenome / Metatranscriptome255Y
F020170Metagenome / Metatranscriptome225Y
F026556Metagenome / Metatranscriptome197Y
F043407Metagenome / Metatranscriptome156Y
F071245Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1000006822F020170GAGMSKHVDSSPYQNEQSHEQLMAAFREYFKANQDWQAKGTRRAGENMRYWLAQIRIIAKQRREHVQQYRVYLDTTKRERKANQNGTGEDQDSTN
Ga0214919_1000006852F015338GGAMALKNGKPNPLDYFNLRRVEFACPHFKYTSLDKYNPMLVKSLDLWIRKNLNNRYYIGQGITLDNSNTIVYNTRIGFESEKELSFFTIACPLLQAR
Ga0214919_1000006857F011665AGGMQNQINLTPITQFIQSVRAAELSQSKEVKLPLQQARLLSLALSEIQDKLIQDYESLYIKLKESADTEVVSIQLDGGDFKN
Ga0214919_1000006866F071245N/AMSPSDHEIIVDWHNQGALWWNETCAMVVEVFGLPGQRFVYTPTEDFMTFCFKSKKDAELCKILLSERL
Ga0214919_1000006868F026556GGAGGMTSSLIKLIFGIALIVIAIAIGPILGIWSLNTLFPVLNIPLTWETWAAFAILLGGASGLRSVRSSK
Ga0214919_1000006871F043407GGAMTAISNLISISNTTSPGYGAIPPAPSPLTIGKVYTTNNTGAFLTTGSNGTSWANEYDTVLKVNQSPPELEVKGRLVLNGRDLEERLNTIERVLSIPERDAILERKHPKLKKLYDEYIAALAKYRTFDTIKESK
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