Scaffold Ga0214919

Basic Information
Taxon OID	3300023184 Open in IMG/M
Scaffold ID	Ga0214919_10000062 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023184 Open in IMG/M

Scaffold ID

Ga0214919_10000062 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	163824
Total Scaffold Genes	262 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	186 (70.99%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

163824

Total Scaffold Genes

262 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

186 (70.99%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	(Source: IMG-VR)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae

(Source: IMG-VR)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003826	Metagenome / Metatranscriptome	466	Y
F005563	Metagenome / Metatranscriptome	396	Y
F010540	Metagenome / Metatranscriptome	302	Y
F011584	Metagenome / Metatranscriptome	289	Y
F033799	Metagenome	176	Y
F036234	Metagenome	170	Y
F045555	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_10000062213	F011584	AGAAG	MIDIAITFFALFFTDVFYTFYLKSINNNETLKASGWSVVVFFIAAIAVVNYTSNHMLLIPACLGAFCGTWVGMKLRNRTK
Ga0214919_10000062233	F045555	GAGG	MNEQIKQPKGKKMTSIFIVRAEDRGAPESIIYGVYPTVELANARCAVLEDSRHDFCHDFVWYDEVKVGPEGADCEFYNR
Ga0214919_10000062237	F010540	GGAGG	MKIRAIVNGVSFYTTKTAIKNRRVGDFTLMNDALYYVLHLKGKNSGFGTRVRYYDHQMKQHCFDVQLNEV
Ga0214919_10000062245	F005563	GGA	MIDYFEALKEMHQGNVVKYVGTVNGNVMSDNGASFCMCRGCIFLFDAGVIKWNKLGYMVYDPDFRYELTGETVDPRAWKPEKNRDRKEIKSKLGYSRIGRNNV
Ga0214919_10000062252	F036234	AGGA	MSNRFDLEQQILECWKITDEIPMMESQGANVADMTSLACVYDFKFKQLWATFESMLADKQML
Ga0214919_10000062255	F033799	GGAG	MSRYFIVVCTECSEEHDTEKVKFLNIEEDIQGRDIMYFECPVTNSEAKSLVYAK
Ga0214919_1000006263	F003826	N/A	MDPITIGLAFTAAQSAVGYIKQAIALGKDVHSLTGQFNKFFESSDAIHRERAKIKAKGSRLGKTDAELGHEALQIAMHSDALRTYERELKDMILWQLGKPEMWEHMIKERTRLFKERAEAEQAEAERLLAHKKKMADMFIFAMYFIAGSVILFAIAMGGVAVYGAAEEKRIYEEKVAARAAVIRRQAKEREAAEKKEIDNYTKN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214919_10000062

Overview

Ecosystem & Geography

Associated Families

Sequences