Scaffold Ga0214919_10000037

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10000037
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 186542
• Total Scaffold Genes: 279
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 220 (78.85%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Associated Families: 12

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F007110	Metagenome / Metatranscriptome	357	Y
F008812	Metagenome / Metatranscriptome	327	Y
F012108	Metagenome / Metatranscriptome	283	Y
F012658	Metagenome / Metatranscriptome	278	Y
F035281	Metagenome / Metatranscriptome	172	Y
F036210	Metagenome / Metatranscriptome	170	Y
F043359	Metagenome / Metatranscriptome	156	Y
F054798	Metagenome / Metatranscriptome	139	N
F070037	Metagenome / Metatranscriptome	123	Y
F074805	Metagenome / Metatranscriptome	119	Y
F088817	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_10000037157	F035281	AGGAG	MMKFAFVIALMLLGSSTYAGECCVNGNCTLRSRTVNVTRELISVPVTVTRRTVEATRNFGRRTVARVRSVVR
Ga0214919_10000037159	F036210	GAGG	MRARYISEVNRKEIQRKYIDQILGEMDFMQIKDSLRDYLSKEKDKSGNYSLECEIRKETPEILIDNWQDYDKPATLTKRKDKDYHLDDPSTQEELHHA
Ga0214919_10000037173	F008812	N/A	MIKRKGWDSVIQWIGVLIALLGLAYTGVKDYQKGDLKIPKIPSRQKIVYPIQYCLMAYDPNIDKVFYLHDNGIWHDYAPPQRRYSPTTQPQQNQGQGQEALGVVNGTQGTSGYRYGQSPQAVANPIR
Ga0214919_10000037177	F000325	GGAG	MKTANGNDKLGKENCIVVSRPVGDSCPSDCDFLGNGCYAEDLENIYPGVRPAGMQNLVTEKNRIRSMLVDAVKKNKDVRWHERGDFFKYGELDNEYVDNVLWACENILASGGSLPTMWAYTHIYDTRLSMELGKYINMYASIHDGEDMKQAKAAGFKLFAWCDSDTKIAPKRPRGKNKVAAWRSALPKLVVLEGEKFITCPEIRRGRGVVTCTKTKNSVHCDLCVRGLANVLFPAH
Ga0214919_10000037180	F012108	AGG	MISIQVTVAEAVAIANTASNDLHDRIVNAIEIALGVNQRRQVTITGGMTLDNRIPCIKAIRIATGWGLKESKEWTDGMVGGWKYDRFVPAQPNVRQSITFKTPEAAEKLLRELTTLGCEGFLS
Ga0214919_10000037183	F043359	GAGG	MEWNNSHKNPPKVGQKVYYFGPNIGIGIGYYSYHPDRKMETYYYNENNEKVVDKEIEICQHVFTNQAKPWTCDACDAPFWLPYDEERAKSWCPIIPEEYTKGLYD
Ga0214919_10000037184	F054798	GAGG	MIYLNLNDIERLAEIVAELVKLDMTVIAELKGTKWSIEVTK
Ga0214919_10000037187	F088817	AGGAG	MNGYELLAEFEKLINDLILVPNSWLPEEFRDNRTDSVSLTDLERKCDSLEIGETDHQIEKREKDRRIAAYTAMIENGQKITYLLK
Ga0214919_10000037190	F074805	N/A	MLRVERLVFLTKGLIMDNLFVVGGLLAAVAVVASFLFYAVYGGSRTSLANAVEGQVFNFTYEQPLHGTHERFLAKVIGKQTLTADQIRKLNSRSRYRANDPNFIRTNHLVTCRTFDGKVRNFYAERVTNCRKPLLAGTLFTSKVASLLF
Ga0214919_10000037205	F012658	N/A	MFATAYKPVVNNLDKIFSAMRTGKYGCVIDTKGNAHVGIINCVMREDGSGKNWIVTITNKTVGNENVFFHAK
Ga0214919_100000374	F070037	AGGA	MNFTESFQEFSSRLTPTDLALYAGVGLVLWVLFKDKLSPVQKLLVVLGEKIKGLVSPSSSVTLPVVDLPKVNPVVLPKIVNDNKDDIFFKLVVSWKQTRDLAEQSGCAEAVKVADQMFPFLSPNVCKKETKA
Ga0214919_1000003783	F007110	GGAGG	MNCIYCKNCVGVDRYEFLVETGRKIICKECSVEDRAVGFMDWGHKTAPSLVMVPSNAKETIRILDRANRRSR