NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10198338

Scaffold Ga0214923_10198338


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10198338 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1187
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013759Metagenome / Metatranscriptome268Y
F017826Metagenome / Metatranscriptome238Y
F019136Metagenome / Metatranscriptome231Y
F031867Metagenome181N

Sequences

Protein IDFamilyRBSSequence
Ga0214923_101983381F013759N/AMKVELGMSLFSKRETLLGLEITTHNGITANEDALYRERIVEFSIGIIFAIFTIGFVSKGEKIDTPEMDNVQRAMKAFESEMDK
Ga0214923_101983382F017826N/AMDKLKRIWNLVCVPTAFFLGALNMWIGETAVGCMFILFATNETINNDNKTK
Ga0214923_101983383F019136N/AMSLTITNYKKLESWSHHYKEFMIGEVIETETEYSFRVGYNSTPYIIKIFRQGTSTIEYEMVLRDGADITQYGREWIAGRKLKSLELTALIFEALIVKFKPKAQPTTGNPNYSNGPF
Ga0214923_101983384F031867AGGAMIVKSKIELSADSLLNTKPTRVETHKEQNYLVYEFDNNEL
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