NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10118775

Scaffold Ga0214923_10118775


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10118775 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1731
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007911Metagenome / Metatranscriptome342N
F015449Metagenome / Metatranscriptome254Y
F057981Metagenome135N

Sequences

Protein IDFamilyRBSSequence
Ga0214923_101187751F007911AGAAGMPAVTMLDRLIEAAFQELLSVTVTGPTYHLSHDKTENVPPSIVIKATLGTEEPVRGSGVFAVPVEIVVDDSYDDTTLDAHTQKCSKILQAFYDSSTLATRLNATTAIGSARCYNAKVDSVEPEADDEERTMRRTFKLAVIAYPNSIAS
Ga0214923_101187753F015449GAGMVDSFWGTTNIKVAAAVAAFGAKLRESDPVTCIVEEGGHRKFTFWFSTGGDQDVKSEMECTWADMKSDPEAPIRYVKAALQNRETLLGLMKRAEPILSIKRGSQTLLISERASPELKRAMIKKL
Ga0214923_101187754F057981N/AMSEEALLQELDNSLISPDRFFKDQRLAPYTEGSRLLMLQVRDDSDSAIYFVWSFIYLHILLAEDRKKTIRLAWDKDAFREKLMDWIAEMTEDDRNTASVMCSAILAEANKARVNVIPSAIAAPPGNA
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