Scaffold Ga0214923_10109093

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10109093
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1841
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F077310	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_101090932	F077310	AGG	MTLDSNSIIIVIAASILSGMGTAFVSNYKESKKEKARIVEREQDMLKMELKDLEIKLYKLERDLIEWRDRYYNTLQELIEVKAELESTLIKLTHIGMHE
Ga0214923_101090933	F000671	GAGG	MEKILCYSCNKSKNKLNVKKSSLISINLFMCETCITSKFEPRWVVILAGRQLGSDAVKEFIVKKRYCGNDISASELLV
Ga0214923_101090935	F000473	AGG	MEFINKDKDHFKYGINEWTGEPNKPVFYTKEMAKRIREIKKPDMNLQMDIAKYPDFLAIRLYEDNFLQYQGIKKEMIIDYVGKVKKLIESYGVRCELEGVPSARILRGN