NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10092863

Scaffold Ga0214923_10092863


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10092863 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2069
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024040Metagenome / Metatranscriptome207Y
F032536Metagenome / Metatranscriptome179Y
F062447Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0214923_100928633F024040N/AMNIYVTGHNWLAKVDIDTTIINKSDWYNEACTRAVESILDQEEKNGVELKIQDYDDFGLGVILLTYLEKDIKKEGEHRVLLTSNVLANAGRWEEYKFVKDYEEKCKEEGL
Ga0214923_100928634F062447N/AMQGGRFMKHKIFWEKNSRIKGIVPQEQIIDKTSTANFPCEAVTIRMHNLNTKNPVAVAYFHGKESQNIGWGGQNHSFAETKLIVTFNKEKEEYGFNGAIKSFSLQDLKEVLDLVREVLNK
Ga0214923_100928635F032536AGAAGMSQKQTLEELMRGFRFHKNPILNWFLGEANYWYHSILNGKWKIKNTFQKLIRGYSDIDCWNLPQSTAKFMLPRIKHLRKNFNSLSNRHHLVVDGKIIPYIYDEKNIEFNKEHNEFVDKSNSLLIHLSKEEYENVLDEIIFALQMIVDEENPKINLEELYEVYPEGFDPIKDRQIFLTPQGDGTSLVEFESKNNIQPDYSKLNKAYERQRNGLILLGLYFKDLWD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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