Scaffold Ga0214923_10091877

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10091877
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2084
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020529	Metagenome / Metatranscriptome	223	Y
F022636	Metagenome / Metatranscriptome	213	N
F041152	Metagenome / Metatranscriptome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_100918771	F022636	N/A	GYVPNAQKYSEHIAFAKKYYPPEATTMVMVVHSEYNDSTYDNTFQYIIVYDKDGNELTPLKKTAKECREHWTTEYLPIPNTSHGHYGASESDEPLEDVVIPLTSEVPELYIKQN
Ga0214923_100918772	F020529	AGCAG	MFSNKNIVKYCAKYFVLLTVGAYIFNTSVIFINQKSDVANLIGSALFAGLFVGTLLILKSDVTKLVKNINKTENKENE
Ga0214923_100918774	F041152	AGGA	MNIVDYIVKNWDTLPKSEFDDDRIVIFKEIENDDWGYGHHSYEGIGVDKDGNVTWCYSSGCSCSGGPSLETKKDLKVFVVNEGIDLNVDPSTINFGSLQVEFNSY