Scaffold Ga0214923_10090121

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10090121
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2113
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028157	Metagenome	192	Y
F051124	Metagenome	144	Y
F085645	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_100901214	F085645	AGG	MTDGAEILTEAHDLITGPRQAEYSHPFDDYYKVRELFYTMTGVMLSVKQAVTFMVCVKMARLSTNLENDTWKRDTVVDAAGYLGCLAMVHEHSDQRLRDLRRIDADLDPLP
Ga0214923_100901215	F028157	N/A	MTTPDTDYLTPRFVTVMADGDGYARWVGSIDATDIMQAYRTGGVYILVMLDEEGRITLGFKPGRHWEASWSPPISLERR
Ga0214923_100901217	F051124	N/A	MTKKTDFIEQYINAQGNGWCIRYICIAIVEDEAGEQTFLVQASPNQTAAETIGLCEAVSHIQKAKIAKAWIREEDDQTDE