Scaffold Ga0214923_10078371

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10078371
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2335
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010746	Metagenome / Metatranscriptome	299	Y
F016115	Metagenome / Metatranscriptome	249	Y
F020860	Metagenome / Metatranscriptome	221	N
F035200	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_100783713	F020860	AGTAG	MEITRAKKLKEGGYALYAIDPKTKQEAQVGYIGENLNLEAWLPKGVKIENS
Ga0214923_100783714	F016115	AGGAG	LKILEESFTSKGFKLQQIKRDGDVAIYKKQLDDGESENYHYEVIAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWGYTCTTIEDAHKRFNDLQKKLNDYVATAILPSGEKRGRGRPRKIILTENQTSVE
Ga0214923_100783715	F010746	N/A	MTYYCSVSGEALPPERVEALQVLGVPESLWTKKEYSQVKKLRAVYAGDDGSNDIVICDKVDRGNLFDNELVSELENES
Ga0214923_100783716	F035200	GGAG	MNHKFIVLRDGVRVSDDIHSTEVEAEKEAGFWREIIRRWPDGTKVIIKKIGG