Scaffold Ga0214923_10073945

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10073945
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2432
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009135	Metagenome / Metatranscriptome	322	Y
F019476	Metagenome / Metatranscriptome	229	N
F024047	Metagenome / Metatranscriptome	207	N
F042296	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_100739452	F019476	N/A	MNNKTKSARIVLDIEWECADDSDLPSLWDWKRIKLPMDLTKVKYVGIQQLNGPENVSNWMGN
Ga0214923_100739453	F024047	GGA	MTIVKKTDIVDWLKNVVEKKMVKELNVPNAKVYLSCDRPHPDVILETKNADGDLQIVRFLII
Ga0214923_100739455	F009135	N/A	MSNPKYYLTVNLPPNFDEVDAETIKTDLMAYINSKNQYGAMYGPKSHKKGITVEKVIYRTNED
Ga0214923_100739457	F042296	N/A	MNLFKSIIKWCGVIVYAAFLATVAYAATLPEPIKVYLIVSSRGGEYTIEKIYLKKENAEKYRDMFKDSHNYTVEERELTE