NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10060281

Scaffold Ga0214923_10060281


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10060281 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2807
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009669Metagenome / Metatranscriptome314Y
F010817Metagenome / Metatranscriptome298Y
F014229Metagenome / Metatranscriptome264Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_100602811F010817AGGAGLKKFASVLVLNLFLVSCATVTPNKIEDDKSSYDATTPKQYEKDNGGLISFIGDDALITSQARERYNNLIEMYKIKFKKEKAIELKNDSGVKPYKDNFGNELYLIDSEHLVYFGVLNSW
Ga0214923_100602813F014229GGAGMNKLQLIAVALLSVFLGACATTPTGQVDPATSVSNALPYVKPAVVLACTVVLDQALSPADRVEKAKMINHVASIVEGLTVGTAPTPDQLQKALTDYLPEEKTHWVNYVSVIKDIYAQQFARIDGNTALAIKVLNAIASGCKDATASYVE
Ga0214923_100602814F009669N/AMKTMLSKIFGPNWRSSSSGITTVVAVCTAIAIHSDPSLVAFLPDGLENYVLGISKLVAVVSGIIFALTVKDAAVTGGTVAQTNEAKIRIPTEKIHE
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