NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10037591

Scaffold Ga0214923_10037591


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10037591 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3907
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030670Metagenome / Metatranscriptome184Y
F032536Metagenome / Metatranscriptome179Y
F034827Metagenome / Metatranscriptome173Y
F048123Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_100375912F032536GGAMSERQTLEELMQSFRFHKNPILNWFLGETNYWYHSILNGKWKVKNTFQKLIRGYSDSDCWNLPQSTAKFMLPIIKHLRKNYHSLANRHHLIIDNKIVPYVAEENVFEFNKTLGCYTDKTTGLGISLDQKEYEYVLDEIIFALQMIVDEENPKISLEELYEVYPKGFDPIKDNKMFLTKESNDNYLVEFEAENDIKPDYTKLNKAYERQRNGLLLLGLYFKDLWD
Ga0214923_100375915F048123GGAGMKPRYDFNKGKLISYDGEIIEFAETKAIDKYADQVQEIMALFNLKKGEYILTDESTIGHFGKETINKILLEKFKKKYGFSLTNKSNISKIAERMYNFRPF
Ga0214923_100375916F034827N/AMKYTITSRDKEAMVEFNSLKEGDVFSFFDPESVQRGNHAIYMKIKNGSNNIVDLDDGKVFGFSDKKRNTLNDPDEEQGDKVYKLNAKINIIV
Ga0214923_100375918F030670GGAVNKVIRYIKELEDEFGKPMDKWAVYEETQKNNHPHAKFIDAKILKTFTSPYHARNWMENDGK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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