NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10028528

Scaffold Ga0214923_10028528


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10028528 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4715
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (43.75%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007359Metagenome / Metatranscriptome352Y
F010746Metagenome / Metatranscriptome299Y
F016115Metagenome / Metatranscriptome249Y
F020860Metagenome / Metatranscriptome221N
F022820Metagenome / Metatranscriptome212Y
F035200Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1002852811F007359N/AMELVKQNLGAHWVIGIKGNKDEIEQFHNRVYNWGGTNGELQWMSESFAYFWITLEKLERVMFKYVMNSMSDKLGQKFRGAKGGLKQVVMNRVMNTINNIPSEHFVKTAQVQDFYSIGQVSAEKLDHDS
Ga0214923_1002852815F022820N/AMKYENRISKILEKRILKDEDPKLIAQIDKYLNELEIVFSKWAKAHPNWKETEE
Ga0214923_100285283F020860AGTAGMEITKAKKLQEGGYALYAIDPKTKQESQVGYIGENLSLEAWLPKGVKVENS
Ga0214923_100285284F016115AGGAGLKILEESFTSKGFKLQQVKRDGDVAIYKKQLDDGESENYHYEVIAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWAYTCSTIEDANNRFNQLAEKLKNYNETAISPSGEKRGRGRPRKINLPNPPAIIKLTPEQMGL
Ga0214923_100285285F010746GGAMIYRCAVSGEAIPPERVEALQVLGVPESQWTKKEYSQVKKLRAVYAGDDGSNDIVICDKVDGGSLFDNEIIAEVEE
Ga0214923_100285286F035200GAGGMNIRYIVLRDGYRVSEDMHTDPKEAEIEADFWRSVIRRWPDGTKVIVKKIGGDKEKA
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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