NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10027577

Scaffold Ga0214923_10027577


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10027577 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4827
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000635Metagenome / Metatranscriptome970Y
F010603Metagenome / Metatranscriptome301Y
F020886Metagenome / Metatranscriptome221N
F060708Metagenome / Metatranscriptome132N
F068581Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_100275771F060708N/ANQTNLLKGYYRQEQKLGSRFRSQYTPDSIKRAALRRKKYEQ
Ga0214923_1002757710F068581GGAGGLKLELSVQEINLILASLGRMPYEAVFGLVEKIQAQAKEQSEAK
Ga0214923_1002757711F000635GGAGGMTLTEIAQYAGEKVGKTDSDTITFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTSRQITLGTNVETPLSVAYNDAEVDPIDLATIISQDPGLLSDDRTGDPDTYHFTGRNSSGVAQLNLYPRLATSGTIPLRVVEKLKCITRTNYIVDFPPSNDALSDELRLPHVHHLVLALTHADALERERQYAKAQAITQGANSDLAAMANYELSQVGGVKQITPQSLGELTIEEMFSA
Ga0214923_100275772F010603AGGAGMSNEFQRSPIKAKNKAVRIDGANFANVIEFTASSSGGTVNTVATAPASLNVTLNGTSYRIALHAAS
Ga0214923_100275778F020886GGAGGVSLDEISDLKDRIAIQSERLARMEERQVQLYAMVERSLAFHGDVANRLSALEHLRTKVLAVAGLIGLVCSMAWDVLKNRFNS
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