Basic Information | |
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Taxon OID | 3300023179 Open in IMG/M |
Scaffold ID | Ga0214923_10022699 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5525 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (31.82%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F007359 | Metagenome / Metatranscriptome | 352 | Y |
F010746 | Metagenome / Metatranscriptome | 299 | Y |
F016115 | Metagenome / Metatranscriptome | 249 | Y |
F020860 | Metagenome / Metatranscriptome | 221 | N |
F022820 | Metagenome / Metatranscriptome | 212 | Y |
F035200 | Metagenome / Metatranscriptome | 172 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0214923_1002269913 | F007359 | AGGAG | MQLVKQNLGAHWVIGIKGNKDEIEQFHNRVYNWGGTNGELQWMSESFAYFWITLEKLERVMFKYVMNSMSDKLGKKFIGAKGGLKQVVMNRVLNTINNIPVESFVRTAQVQDFYSIGEVSAEKLDTDS |
Ga0214923_1002269916 | F022820 | N/A | MKHENRISKILEKRVLQDEDPKLIAQIDKYLKELEVVFVKWAKAHPNWKDSEE |
Ga0214923_100226993 | F020860 | AGTAG | MEITKAKKLKEGGYALYAIDPKTKTETQVGYVGENLALEAWIPKGVKIENS |
Ga0214923_100226994 | F016115 | AGGAG | LKILEESFTSKGFKLQQIKRDGDVAIYKKQLDDGESENYHYEVVAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWGYTCTTIEDANKRFDQLQKKLNDYVATAILPSGEKRGRGRPRKNVLTENQNIVE |
Ga0214923_100226995 | F010746 | N/A | MTYKCAVSGEAIPPERVEALQVLGVPEALWTKKEYSQVRKLKAVYAGDDGSNDIVICDNVDGGNLFENEAIAETEIDN |
Ga0214923_100226996 | F035200 | GGAG | LTTKFIVLRDGIKVSDDLHEKVEDAEHEANFWREIIKRWPDGTKVTIKKIGG |
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