NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10022699

Scaffold Ga0214923_10022699


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10022699 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5525
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (31.82%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007359Metagenome / Metatranscriptome352Y
F010746Metagenome / Metatranscriptome299Y
F016115Metagenome / Metatranscriptome249Y
F020860Metagenome / Metatranscriptome221N
F022820Metagenome / Metatranscriptome212Y
F035200Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1002269913F007359AGGAGMQLVKQNLGAHWVIGIKGNKDEIEQFHNRVYNWGGTNGELQWMSESFAYFWITLEKLERVMFKYVMNSMSDKLGKKFIGAKGGLKQVVMNRVLNTINNIPVESFVRTAQVQDFYSIGEVSAEKLDTDS
Ga0214923_1002269916F022820N/AMKHENRISKILEKRVLQDEDPKLIAQIDKYLKELEVVFVKWAKAHPNWKDSEE
Ga0214923_100226993F020860AGTAGMEITKAKKLKEGGYALYAIDPKTKTETQVGYVGENLALEAWIPKGVKIENS
Ga0214923_100226994F016115AGGAGLKILEESFTSKGFKLQQIKRDGDVAIYKKQLDDGESENYHYEVVAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWGYTCTTIEDANKRFDQLQKKLNDYVATAILPSGEKRGRGRPRKNVLTENQNIVE
Ga0214923_100226995F010746N/AMTYKCAVSGEAIPPERVEALQVLGVPEALWTKKEYSQVRKLKAVYAGDDGSNDIVICDNVDGGNLFENEAIAETEIDN
Ga0214923_100226996F035200GGAGLTTKFIVLRDGIKVSDDLHEKVEDAEHEANFWREIIKRWPDGTKVTIKKIGG
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Institute for Fundamental Biomedical Research
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