Scaffold Ga0214923_10021087

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10021087
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5810
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011208	Metagenome	293	N
F065530	Metagenome / Metatranscriptome	127	Y
F069832	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1002108712	F065530	N/A	VIGAILQIIASILRLIPGWKEKRIDQIEGEWRNNNQAIDNDLGPKPWWMRYNDTINEDKRGGQ
Ga0214923_100210875	F011208	AGGAG	MTEDEIIKAYLSRLGKKGGSVKGSCKARKLSREHYQTVAQAQRERWQKWRLENGRPAIKRER
Ga0214923_100210879	F069832	N/A	MDDIGGSPTAHKAKNGKFKFSPEIEAKILDACGSGFTIEKAGALVGVNPSTIRTWIQRMPKFGEKVETARKNHELSLLKSIEQAGEKSWQAKAWLAERIYHHAIPSSRLTVDTSVTHNAGAGFAQLLAGLASRRAEKKAQVIDAQVIKPIEDTKSKYNTYCATDDIQTIVTPTPGQNEKAVGKARHVRMKRRKPRKSMGDTTTPPAQPPAPFETHNTPLNNSDSK