Scaffold Ga0214923_10018366

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10018366
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6424
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012014	Metagenome / Metatranscriptome	284	Y
F021096	Metagenome / Metatranscriptome	220	N
F060705	Metagenome / Metatranscriptome	132	N
F064517	Metagenome / Metatranscriptome	128	N
F098891	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1001836610	F012014	N/A	MNLLSKEVLIGAASLGAGAVIAKVVQKKVLPMISPTISPVVGNLSTLVVGILTPTLIKGSVGTGLGAGMIAVSVAGLVDPYLAKAGITGYDDTYMGDVLMGETGGDVLMGAADFGSPSNDFTSAASGEMDY
Ga0214923_100183663	F064517	N/A	MARTTTENIFYGRSQQIIADGCFAIAFFRPSTSNPVNVDGIPLEAGQTLSIKQNVGDEDWSTYEIVFGTGAATNELYVTKIMPLTR
Ga0214923_100183665	F098891	N/A	MSLAQTAILASALKGGSSSTPAAKPSGIVESISQKPLQWLVVAGAVVYFGSKALGKLVKTGEERRTETAETTTSKDNAFSFKTFLAQTIPKNTKLLSAAGAYKFAKEVYEALNFYFDENEDVAIGVFKVLPSKIQVAQVAQSFYNYYKIDILNYIKNGNEKNKFRGGLSEDDYKQVITIVNKKSKF
Ga0214923_100183666	F060705	N/A	MAISSLNFIISQFESEKYRYFAIYDEDGDRVYTQNDLIDVEAAINKLRSFFKDNQGYYTIRVFSKKLSDKNNLIARDNSTIAKYNVEVTTPVLPQGVNGLSGMGGNNMLPPDDPRSNAPNMFQVLGQLSQVEQNMKLMEKDHAHYREMKEKDDLIAKLQENEGKSKGMGAIIDRLGEHLADPNVLVGLISGVSQIFKKDVVAPMHGIRSEDIMPMNGIDEQVINNISTRREKMIGAVNFLMQHDANFPENISKLAELAKNKPAIYSMAVSYLNNL
Ga0214923_100183667	F021096	GGAGG	VAAVVSPIINYFLTHNLCKDYTAIEGEMSTLVTLNFPNTGNYQRSYYFASQTMLDGQNATITAIEIVPSTELTILPTGQTNVDSSILPNGVLYVSNLKRSIIATLPLYGLQRSPNNGKPTFTYFNDQVWQNCYVEFTSSGFTTPITPLTFRVYYVPKIKN